RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 NDUFS8O00217 210 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 DHHO43323 396 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 LMX1BO60663 402 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 OR7A10O76100 309 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 BCL10O95999 233 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 YAP1P46937 504 aaKnown RBP14.34□□□□□ -0.11
USP40-212ENST00000473191 ERVS71-1P61550 626 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 LAPTM4AQ15012 233 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 ALKBH6Q3KRA9 238 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 IQCCQ4KMZ1 466 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 CYBRD1Q53TN4 286 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 COQ5Q5HYK3 327 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 NANOGNBQ7Z5D8 188 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 CLDN22Q8N7P3 220 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 OR4K5Q8NGD3 323 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 TMEM239Q8WW34 195 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 RASSF5Q8WWW0 418 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 ASB10Q8WXI3 467 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 RCN3Q96D15 328 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 TPD52L3Q96J77 140 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 TSPAN32Q96QS1 320 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 MRPL13Q9BYD1 178 aaKnown RBP14.34□□□□□ -0.11
USP40-212ENST00000473191 SLC19A3Q9BZV2 496 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 OR51B6Q9H340 312 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 DYNLRB1Q9NP97 96 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 CMTM6Q9NX76 183 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 CMAHPQ9Y471 501 aa14.34□□□□□ -0.11
USP40-212ENST00000473191 FAM220BPB1ANY3 271 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 J3KTA2 159 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 LILRA1O75019 489 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 TRMUO75648 421 aaKnown RBP14.33□□□□□ -0.12
USP40-212ENST00000473191 UBL3O95164 117 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 SLC2A10O95528 541 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 RAB36O95755 333 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 HIST1H2ABP04908 130 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 FAM157BP0CG42 384 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 APEHP13798 732 aaKnown RBP14.33□□□□□ -0.12
USP40-212ENST00000473191 KDELR2P33947 212 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 HIST3H3Q16695 136 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 HIST3H2AQ7L7L0 130 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 PIWIL3Q7Z3Z3 882 aaKnown RBP14.33□□□□□ -0.12
USP40-212ENST00000473191 VTCN1Q7Z7D3 282 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 PHC2Q8IXK0 858 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 IL17RDQ8NFM7 739 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 HDAC2Q92769 488 aaKnown RBP14.33□□□□□ -0.12
USP40-212ENST00000473191 HIST1H2ACQ93077 130 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 SGTBQ96EQ0 304 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 SH3GL1Q99961 368 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 RHCGQ9UBD6 479 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 A4GNTQ9UNA3 340 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 RTTNQ86VV8 2226 aa14.33□□□□□ -0.12
USP40-212ENST00000473191 LOC100289279A0A1B0GTE1 492 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 BBIP1A8MTZ0 92 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 OR5F1O95221 314 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 CLPTM1O96005 669 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 HPXP02790 462 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 SERPINA5P05154 406 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 TSPAN19P0C672 248 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 FAM157CP0CG43 387 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 OR8G3PP0DMU2 310 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 ZNF23P17027 643 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 COL8A2P25067 703 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 CDAP32320 146 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 GLRXP35754 106 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 CLRN1P58418 232 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 FMODQ06828 376 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 ELFN2Q5R3F8 820 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 IGFN1Q86VF2 1251 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 MICU2Q8IYU8 434 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 LRRC18Q8N456 261 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 NOXO1Q8NFA2 376 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 OR2T12Q8NG77 320 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 UBASH3BQ8TF42 649 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 NEU4Q8WWR8 484 aaPredicted RBP14.32□□□□□ -0.12
USP40-212ENST00000473191 SEPHS2Q99611 448 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 BEX2Q9BXY8 128 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 REV1Q9UBZ9 1251 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 BAG5Q9UL15 447 aa14.32□□□□□ -0.12
USP40-212ENST00000473191 WNT9BO14905 357 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 NPPAP01160 153 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 IGHG1P01857 330 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 NAT2P11245 290 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 ACADSP16219 412 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 GIFP27352 417 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 RBM34P42696 430 aaKnown RBP14.31□□□□□ -0.12
USP40-212ENST00000473191 GZMKP49863 264 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 RIN1Q13671 783 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 TMEM255AQ5JRV8 349 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 ARMC4Q5T2S8 1044 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 GKAP1Q5VSY0 366 aaPredicted RBP14.31□□□□□ -0.12
USP40-212ENST00000473191 ERICH5Q6P6B1 374 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 PODNL1Q6PEZ8 512 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 SLC15A3Q8IY34 581 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 ZNF786Q8N393 782 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 NMD3Q96D46 503 aaKnown RBP14.31□□□□□ -0.12
USP40-212ENST00000473191 SNX18Q96RF0 628 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 MYOZ1Q9NP98 299 aaPredicted RBP14.31□□□□□ -0.12
USP40-212ENST00000473191 INIPQ9NRY2 104 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 MAN2C1Q9NTJ4 1040 aa14.31□□□□□ -0.12
USP40-212ENST00000473191 TMEM160Q9NX00 188 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms