RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NDFIP1Q9BT67 221 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SGPP1Q9BX95 441 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 NOX4Q9NPH5 578 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 MMP26Q9NRE1 261 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 M0R143 59 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SLC35A2P78381 396 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SHC2P98077 582 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 DEFB118Q96PH6 123 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 TIMM29Q9BSF4 260 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ACTR3CQ9C0K3 210 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ZDHHC11Q9H8X9 412 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SLC17A5Q9NRA2 495 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ZIC2O95409 532 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 C1orf105O95561 183 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 AOAHP28039 575 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 HNRNPA3P51991 378 aaKnown RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 TNFRSF17Q02223 184 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 STK11Q15831 433 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 DPPA4Q7L190 304 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 USP36Q9P275 1121 aaKnown RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 FAM183AA6NL82 134 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 CSO75390 466 aaKnown RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 CYC1P08574 325 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ELAVL4P26378 380 aaKnown RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 IDUAP35475 653 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 GSK3AP49840 483 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 REEP5Q00765 189 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ID2Q02363 134 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SLC9A3R2Q15599 337 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ARHGAP11BQ3KRB8 267 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ABHD17BQ5VST6 288 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SPRYD7Q5W111 196 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 PRR22Q8IZ63 422 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 OR10J5Q8NHC4 309 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 FAM71F1Q96KD3 344 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 CBLCQ9ULV8 474 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 B3GALT5Q9Y2C3 310 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 RAD1O60671 282 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 HMGN2P05204 90 aaKnown RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF154Q13106 437 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 FCN2Q15485 313 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 COX19Q49B96 90 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 FIGLAQ6QHK4 219 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 FJX1Q86VR8 437 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 NAXDQ8IW45 347 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SLC35B4Q969S0 331 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 CAMTA1Q9Y6Y1 1673 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SHEQ5VZ18 495 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF765Q7L2R6 523 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 DMBX1Q8NFW5 382 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SLC38A5Q8WUX1 472 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ADIPOR1Q96A54 375 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 MAP6Q96JE9 813 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ATOH8Q96SQ7 321 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 SLC5A12Q1EHB4 618 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 PXYLP1Q8TE99 480 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 HOXD11P31277 338 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 WNT7BP56706 349 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 BPIFB3P59826 476 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 RAB33AQ14088 237 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 VASNQ6EMK4 673 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 RPUSD3Q6P087 351 aaKnown RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 STACQ99469 402 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 SMIM3Q9BZL3 60 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 BOKQ9UMX3 212 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 ATRXP46100 2492 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 STC2O76061 302 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 MMP15P51511 669 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 TEX261Q6UWH6 196 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 TFAP2EQ6VUC0 442 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 NPWQ8N729 165 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 CYB561A3Q8NBI2 242 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 KLK6Q92876 244 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 HHIPL1Q96JK4 782 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 U3KQ87 197 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 FEZF1A0PJY2 475 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 SGK494L7N484 410 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 SPINT2O43291 252 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 FCER1GP30273 86 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 DEFB115Q30KQ5 88 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 C18orf63Q68DL7 685 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 DUSP23Q9BVJ7 150 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 H3BQ06 376 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 CFIP05156 583 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 CD14P08571 375 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 TYRP1P17643 537 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 MRPL2Q5T653 305 aaKnown RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 FAM26EQ8N5C1 309 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 NANOGP1Q8N7R0 232 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 OR5K2Q8NHB8 316 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 PINX1Q96BK5 328 aaKnown RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 GKN1Q9NS71 199 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 SSC5DA1L4H1 1573 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 C7orf72A4D263 438 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF888P0CJ79 500 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 EPHA5P54756 1037 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 FCRL6Q6DN72 434 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 BCO1Q9HAY6 547 aa12.32□□□□□ -0.44
COL6A3-209ENST00000472056 GPR55Q9Y2T6 319 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-209ENST00000472056 DAPP51397 102 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms