RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 MLLT11Q13015 90 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 GAGE1Q13065 139 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 PKP1Q13835 747 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TFDP1Q14186 410 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SYTL3Q4VX76 610 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 KLHL12Q53G59 568 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 PDZD11Q5EBL8 140 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 C1orf220Q5T0J3 134 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RTL6Q6ICC9 239 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 ANKRD54Q6NXT1 300 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 FAHD2BQ6P2I3 314 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 LCLAT1Q6UWP7 414 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 CWC27Q6UX04 472 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM184AQ6ZMB5 413 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 DPY19L2P2Q6ZN68 376 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SSX6Q7RTT6 188 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 APTXQ7Z2E3 356 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 CCDC71Q8IV32 467 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SPATA6LQ8N4H0 392 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 ATP6V0D2Q8N8Y2 350 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 OR10W1Q8NGF6 305 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 OR4D10Q8NGI6 311 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 MAGEE2Q8TD90 523 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 GPR151Q8TDV0 419 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 CREB3L1Q96BA8 519 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 OTULINQ96BN8 352 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 FAHD2AQ96GK7 314 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TIMD4Q96H15 378 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TXNDC15Q96J42 360 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RNF2Q99496 336 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TSNAXQ99598 290 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SDHCQ99643 169 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 AGPAT1Q99943 283 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 NEURL2Q9BR09 285 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 BTBD10Q9BSF8 475 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 CHRNA10Q9GZZ6 450 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 DEFB129Q9H1M3 183 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 IL25Q9H293 177 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SPNS1Q9H2V7 528 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 OR51M1Q9H341 326 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 EML4Q9HC35 981 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 POLD4Q9HCU8 107 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC17A5Q9NRA2 495 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 DCAF13Q9NV06 445 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 TREM2Q9NZC2 230 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 BTNL2Q9UIR0 455 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 PILRAQ9UKJ1 303 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 RAI2Q9Y5P3 530 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 MTCH2Q9Y6C9 303 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 NPATQ14207 1427 aa4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 BAZ1BQ9UIG0 1483 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-210ENST00000468534 USP47Q96K76 1375 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 CCDC182A6NF36 153 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 METTL15A6NJ78 407 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 NPIPA5E9PKD4 350 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 LMO7DNF2Z398 122 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 K7EN84 100 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 PSMD12O00232 456 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DFFAO00273 331 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 PLPP3O14495 311 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 RNMTO43148 476 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 FGF16O43320 207 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SOX30O94993 753 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 IFNA16P05015 189 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SCGB1A1P11684 91 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DAOP14920 347 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 AOC1P19801 751 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 PGCP20142 388 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 FUT3P21217 361 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 IDSP22304 550 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 CA4P22748 312 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 LHCGRP22888 699 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 GNRHRP30968 328 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SERPINB5P36952 375 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 NBL1P41271 181 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SLCO1A2P46721 670 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 BRCC3P46736 316 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 METAP2P50579 478 aaKnown RBP eCLIP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DAP3P51398 398 aaKnown RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 CRYBA4P53673 196 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 ESRRGP62508 458 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 MYBPHQ13203 477 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 MAD2L1BPQ15013 274 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 IRF4Q15306 451 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 GABRA6Q16445 453 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DGUOKQ16854 277 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 LRRC36Q1X8D7 754 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 PGGHGQ32M88 737 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 TPRG1LQ5T0D9 272 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 GGNBP1Q5YKI7 109 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DMKNQ6E0U4 476 aaPredicted RBP4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 PNCKQ6P2M8 343 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DHRS4L2Q6PKH6 230 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 ZNF836Q6ZNA1 936 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 Q7L0L9 218 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 ANKRD37Q7Z713 158 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 LGI3Q8N145 548 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 SLC39A11Q8N1S5 342 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 DNAJC22Q8N4W6 341 aa4.17□□□□□ -1.74
CCDC88A-210ENST00000468534 TMEM99Q8N816 258 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms