RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 FAM157BP0CG42 384 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 PGA4P0DJD7 388 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 PGA3P0DJD8 388 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 OR8G3PP0DMU2 310 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 GAAP10253 952 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 MAGEB1P43366 347 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 ZP4Q12836 540 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 CYP51A1Q16850 503 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 NKPD1Q17RQ9 610 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 REP15Q6BDI9 236 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 RGS7BPQ6MZT1 257 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-204ENST00000462475 LRFN4Q6PJG9 635 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 SLC30A7Q8NEW0 376 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 ADAMTS16Q8TE57 1224 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 ZNF566Q969W8 418 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 SLC25A44Q96H78 314 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-204ENST00000462475 TSPAN32Q96QS1 320 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 OCEL1Q9H607 264 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 NANSQ9NR45 359 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 METRNQ9UJH8 293 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 ZNF346Q9UL40 294 aaKnown RBP13.78□□□□□ -0.2
COL7A1-204ENST00000462475 SLC7A7Q9UM01 511 aa13.78□□□□□ -0.2
COL7A1-204ENST00000462475 DHHO43323 396 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 RNF13O43567 381 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 CD247P20963 164 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 TMEM33P57088 247 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 ERVS71-1P61550 626 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 LMO4P61968 165 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 MRPS11P82912 194 aaKnown RBP13.77□□□□□ -0.21
COL7A1-204ENST00000462475 RBBP4Q09028 425 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 AGBL2Q5U5Z8 902 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 TTC33Q6PID6 262 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-204ENST00000462475 RETREG3Q86VR2 466 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 SEMA6DQ8NFY4 1073 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 OR4K5Q8NGD3 323 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 TAMM41Q96BW9 452 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF385DQ9H6B1 395 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 TAAR3PQ9P1P4 343 aa13.77□□□□□ -0.21
COL7A1-204ENST00000462475 LEF1Q9UJU2 399 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-204ENST00000462475 TRAPPC13A5PLN9 417 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 CDC14BO60729 498 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 QDPRP09417 244 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 ASAH2BP0C7U1 165 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 UMPSP11172 480 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 RUNX1T1Q06455 604 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 DEF8Q6ZN54 512 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 DPP10Q8N608 796 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 OR51F2Q8NH61 342 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 LRRC37BQ96QE4 947 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 CGREF1Q99674 301 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF426Q9BUY5 554 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF416Q9BWM5 594 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 RNF121Q9H920 327 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 CDH20Q9HBT6 801 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF229Q9UJW7 825 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 GRIP1Q9Y3R0 1128 aa13.76□□□□□ -0.21
COL7A1-204ENST00000462475 IGLV3-9A0A075B6K5 115 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 C17orf100A8MU93 164 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 ENTPD5O75356 428 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 RGS9O75916 674 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 FARS2O95363 451 aaKnown RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 IGHG1P01857 330 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF250P15622 560 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 PCGF2P35227 344 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 CRYBA2P53672 197 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 KLF3P57682 345 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 CCL8P80075 99 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 MYBPC1Q00872 1141 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 AVPI1Q5T686 147 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 TMEM53Q6P2H8 277 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 SHQ1Q6PI26 577 aaKnown RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 THSD4Q6ZMP0 1018 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 SLC16A14Q7RTX9 510 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 NANOGNBQ7Z5D8 188 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 NOXO1Q8NFA2 376 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 SYNPRQ8TBG9 265 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 GTF3AQ92664 365 aaKnown RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 MCHR2Q969V1 340 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 THOC1Q96FV9 657 aaKnown RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 ZNF347Q96SE7 839 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 PRSS27Q9BQR3 290 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 SLC19A3Q9BZV2 496 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 PCDHAC1Q9H158 963 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 MEPEQ9NQ76 525 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 HINT3Q9NQE9 182 aaKnown RBP13.75□□□□□ -0.21
COL7A1-204ENST00000462475 TRIM33Q9UPN9 1127 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 NDUFAF1Q9Y375 327 aa13.75□□□□□ -0.21
COL7A1-204ENST00000462475 SLC22A23A1A5C7 686 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 ANGPT2O15123 496 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 SNAP29O95721 258 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 BCL10O95999 233 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 LCKP06239 509 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 CLRN1P58418 232 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 GLO1Q04760 184 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 SLC36A2Q495M3 483 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 C12orf54Q6X4T0 127 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 PATL1Q86TB9 770 aaKnown RBP13.74□□□□□ -0.21
COL7A1-204ENST00000462475 ICA1LQ8NDH6 482 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 SNX33Q8WV41 574 aa13.74□□□□□ -0.21
COL7A1-204ENST00000462475 MPP4Q96JB8 637 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms