RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 THBDP07204 575 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 DNASE1P24855 282 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 SEC23BQ15437 767 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 TBPL2Q6SJ96 375 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 ZER1Q7Z7L7 766 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 C1orf174Q8IYL3 243 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 TEX47Q8TBZ9 253 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 KCNK17Q96T54 332 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 TMEM38BQ9NVV0 291 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 KCNG2Q9UJ96 466 aa9.39□□□□□ -0.91
UBR4-208ENST00000459947 DEFB108AA8MXU0 73 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 RAB36O95755 333 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 IGHV3-9P01782 118 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 CD47Q08722 323 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 SYT9Q86SS6 491 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 TXNDC15Q96J42 360 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 TMEM204Q9BSN7 226 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 ZNF346Q9UL40 294 aaKnown RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 TRAV27A0A087WT01 109 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 F13BP05160 661 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 HLA-DOBP13765 273 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 PTNP21246 168 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 RPS23P62266 143 aaKnown RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 PLP2Q04941 152 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 TOP3AQ13472 1001 aaPredicted RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 SHQ1Q6PI26 577 aaKnown RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 SLC25A47Q6Q0C1 308 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 FOXL2NBQ6ZUU3 175 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 CDC20BQ86Y33 519 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 AQP11Q8NBQ7 271 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 PLPPR2Q96GM1 343 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 ZC3HAV1LQ96H79 300 aaKnown RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 TBC1D23Q9NUY8 699 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 VSX1Q9NZR4 365 aaPredicted RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 HMGN1P05114 100 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 QDPRP09417 244 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 GRK5P34947 590 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 MELKQ14680 651 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 WDR31Q8NA23 367 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 PIGTQ969N2 578 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 TSPAN32Q96QS1 320 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 EMC6Q9BV81 110 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 IFT27Q9BW83 186 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 SIAEQ9HAT2 523 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 BEX4Q9NWD9 120 aaPredicted RBP9.38□□□□□ -0.91
UBR4-208ENST00000459947 KIF17Q9P2E2 1029 aa9.38□□□□□ -0.91
UBR4-208ENST00000459947 NTF4P34130 210 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 ZNF704Q6ZNC4 412 aaPredicted RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 MCHR2Q969V1 340 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 SLC38A2Q96QD8 506 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 CCNB1IP1Q9NPC3 277 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 BAHCC1Q9P281 2608 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 SPTBN1Q01082 2364 aaKnown RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 PRSS37A4D1T9 235 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 C12orf71A8MTZ7 269 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 RAF1P04049 648 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 CDH2P19022 906 aaPredicted RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 NOS3P29474 1203 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 ACTR3P61158 418 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 LAPTM4AQ15012 233 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 ANKRD34AQ69YU3 496 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 PAMR1Q6UXH9 720 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 CDH24Q86UP0 819 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 IL20Q9NYY1 176 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 CDC42EP2O14613 210 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 RRP9O43818 475 aaKnown RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 CRYAAP02489 173 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 FOXD4Q12950 439 aaPredicted RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 ZNF770Q6IQ21 691 aaPredicted RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 ZNF544Q6NX49 715 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 ZNF611Q8N823 705 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 HDAC2Q92769 488 aaKnown RBP9.37□□□□□ -0.91
UBR4-208ENST00000459947 MBD6Q96DN6 1003 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 GABARAPL1Q9H0R8 117 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 FKBP7Q9Y680 259 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 CELSR3Q9NYQ7 3312 aa9.37□□□□□ -0.91
UBR4-208ENST00000459947 CST2P09228 141 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 BMP4P12644 408 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 ERVK-25P63136 954 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 FAM122BQ7Z309 247 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 OR2T33Q8NG76 320 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 OR52N5Q8NH56 324 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 NMD3Q96D46 503 aaKnown RBP9.36□□□□□ -0.91
UBR4-208ENST00000459947 CENPNQ96H22 339 aaPredicted RBP9.36□□□□□ -0.91
UBR4-208ENST00000459947 ERMAPQ96PL5 475 aaPredicted RBP9.36□□□□□ -0.91
UBR4-208ENST00000459947 GRIP2Q9C0E4 1043 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 RACGAP1Q9H0H5 632 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 PDP1Q9P0J1 537 aaPredicted RBP9.36□□□□□ -0.91
UBR4-208ENST00000459947 ATPIF1Q9UII2 106 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 HS3ST1O14792 307 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 ARHGEF9O43307 516 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 MSR1P21757 451 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 PAICSP22234 425 aaKnown RBP9.36□□□□□ -0.91
UBR4-208ENST00000459947 CD40P25942 277 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 SCRN3Q0VDG4 424 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 GSG1Q2KHT4 349 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 SLC22A24Q8N4F4 322 aa9.36□□□□□ -0.91
UBR4-208ENST00000459947 UTP4Q969X6 686 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms