RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 V9GYQ6 96 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 TRAV27A0A087WT01 109 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 A0A1W2PRQ8 180 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 hCG_2039718K7EN88 272 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 ARPC2O15144 300 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 FARS2O95363 451 aaKnown RBP13.2□□□□□ -0.3
LIMS3-201ENST00000437679 RAB36O95755 333 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 CELA3BP08861 270 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 OR8G3PP0DMU2 310 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 NR2C1P13056 603 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 GPR4P46093 362 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 CTXN1P60606 82 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 RUNX1T1Q06455 604 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 PIGFQ07326 219 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 TOP3AQ13472 1001 aaPredicted RBP13.2□□□□□ -0.3
LIMS3-201ENST00000437679 DGCR6Q14129 220 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 HIST3H3Q16695 136 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 FGD3Q5JSP0 725 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 ARMC4Q5T2S8 1044 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 C11orf71Q6IPW1 123 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 PODNL1Q6PEZ8 512 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 TSEN54Q7Z6J9 526 aaKnown RBP13.2□□□□□ -0.3
LIMS3-201ENST00000437679 FAM86B1Q8N7N1 296 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 OR13C2Q8NGS9 318 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 MCHR2Q969V1 340 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 MCUR1Q96AQ8 359 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 C7orf34Q96L11 122 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 MRPL13Q9BYD1 178 aaKnown RBP13.2□□□□□ -0.3
LIMS3-201ENST00000437679 NDEL1Q9GZM8 345 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 DENND2DQ9H6A0 471 aaPredicted RBP13.2□□□□□ -0.3
LIMS3-201ENST00000437679 SEC61A2Q9H9S3 476 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 TMEM38BQ9NVV0 291 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 B3GNT2Q9NY97 397 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 C2CD3Q4AC94 2353 aa13.2□□□□□ -0.3
LIMS3-201ENST00000437679 TRIM64A6NGJ6 449 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 TRIM64BA6NI03 449 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 VSTM5A8MXK1 200 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 H7C1Q1 480 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 INHBBP09529 407 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 CALB2P22676 271 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 CALCRP30988 508 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 PTDSS1P48651 473 aaKnown RBP13.19□□□□□ -0.3
LIMS3-201ENST00000437679 SMIM11AP58511 58 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 RPL27P61353 136 aaKnown RBP13.19□□□□□ -0.3
LIMS3-201ENST00000437679 RAB1AP62820 205 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 VLDLRP98155 873 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 MYBPC1Q00872 1141 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 CD47Q08722 323 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 CLEC12BQ2HXU8 276 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 FAM205BPQ63HN1 556 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 TMPRSS11FQ6ZWK6 438 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 BIVMQ86UB2 503 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 MYPOPQ86VE0 399 aaPredicted RBP13.19□□□□□ -0.3
LIMS3-201ENST00000437679 SKA3Q8IX90 412 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 SLC22A24Q8N4F4 322 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 SLC7A13Q8TCU3 470 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 FBXO17Q96EF6 278 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 TNFRSF13CQ96RJ3 184 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 SEPHS2Q99611 448 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 KRCC1Q9NPI7 259 aaPredicted RBP13.19□□□□□ -0.3
LIMS3-201ENST00000437679 CA10Q9NS85 328 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 FAM53CQ9NYF3 392 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 ADAM21Q9UKJ8 722 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 FBXL3Q9UKT7 428 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 PMF1-BGLAPU3KQ54 211 aa13.19□□□□□ -0.3
LIMS3-201ENST00000437679 SETD2Q9BYW2 2564 aaPredicted RBP13.19□□□□□ -0.3
LIMS3-201ENST00000437679 IGHV2OR16-5A0A0B4J2B6 119 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 A6NIZ1 184 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 DIRAS1O95057 198 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 IGHV4-39P01824 125 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 IGHMP01871 453 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 RPL4P36578 427 aaKnown RBP13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ACVR1BP36896 505 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 SERPINF1P36955 418 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 GIPRP48546 466 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 RAP1BP61224 184 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 RAP1AP62834 184 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 RAB35Q15286 201 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 NRN1LQ496H8 165 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ZBED5Q49AG3 693 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 VHLLQ6RSH7 139 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 DPPA2Q7Z7J5 298 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 IGFN1Q86VF2 1251 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ARHGAP24Q8N264 748 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 LRRC75AQ8NAA5 344 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 NUP37Q8NFH4 326 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 OR4K5Q8NGD3 323 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 FNDC8Q8TC99 324 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 HDAC2Q92769 488 aaKnown RBP13.18□□□□□ -0.3
LIMS3-201ENST00000437679 FAM46AQ96IP4 442 aaKnown RBP13.18□□□□□ -0.3
LIMS3-201ENST00000437679 COX4I2Q96KJ9 171 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ALG12Q9BV10 488 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 NOX3Q9HBY0 568 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF224Q9NZL3 707 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 GDF2Q9UK05 429 aaPredicted RBP13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF346Q9UL40 294 aaKnown RBP13.18□□□□□ -0.3
LIMS3-201ENST00000437679 ARFGEF3Q5TH69 2177 aa13.18□□□□□ -0.3
LIMS3-201ENST00000437679 FAM171A2A8MVW0 826 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 H7C417 338 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 MGRN1O60291 552 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms