RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PAQR5Q9NXK6 330 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 NDRG3Q9UGV2 375 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 IL20RAQ9UHF4 553 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 NDRG4Q9ULP0 352 aaKnown RBP10.76□□□□□ -0.69
PTPRF-208ENST00000437607 B3GALT5Q9Y2C3 310 aa10.76□□□□□ -0.69
PTPRF-208ENST00000437607 A0A1W2PRG6 482 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 AQP7P3A6NL99 342 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 PLPP3O14495 311 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 MSTNO14793 375 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 CASKO14936 926 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 ARHGEF9O43307 516 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 CXCL13O43927 109 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 SMPD2O60906 423 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 SYNGR4O95473 234 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 CLIC3O95833 236 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 IFNGP01579 166 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 HMGN1P05114 100 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 ENPP1P22413 925 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 CRYGSP22914 178 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 KIR2DL2P43627 348 aaPredicted RBP10.75□□□□□ -0.69
PTPRF-208ENST00000437607 PCYT1AP49585 367 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 RAC3P60763 192 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 BCL2A1Q16548 175 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF239Q16600 458 aaKnown RBP10.75□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF691Q5VV52 312 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 TMEM236Q5W0B7 351 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 C12orf73Q69YU5 71 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 DPY19L2P2Q6ZN68 376 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 HDDC2Q7Z4H3 204 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 BTLAQ7Z6A9 289 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 ANKK1Q8NFD2 765 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 Q96MF0 132 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 HS3ST6Q96QI5 342 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 SRXN1Q9BYN0 137 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 SEC14L4Q9UDX3 406 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 MCTS1Q9ULC4 181 aaKnown RBP10.75□□□□□ -0.69
PTPRF-208ENST00000437607 RASD1Q9Y272 281 aa10.75□□□□□ -0.69
PTPRF-208ENST00000437607 TRIM64A6NGJ6 449 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 TRIM64BA6NI03 449 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 RIIAD1A6NNX1 92 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 FAM171A2A8MVW0 826 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 H0YC42 278 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 M0R129 80 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 BHLHE40O14503 412 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 AKAP8O43823 692 aaKnown RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 MPZL2O60487 215 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 PTP4A3O75365 173 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 PLGP00747 810 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 CGAP01215 116 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 F13BP05160 661 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 CD14P08571 375 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 GNAO1P09471 354 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 ZNF3P17036 446 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 MYF6P23409 242 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 CD79BP40259 229 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 GIPRP48546 466 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 DAP3P51398 398 aaKnown RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 CARD18P57730 90 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 CTXN1P60606 82 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 CDK5Q00535 292 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 MYBPC1Q00872 1141 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 POU3F1Q03052 451 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 KRR1Q13601 381 aaKnown RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 FHL1Q13642 323 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 C1DQ13901 141 aaKnown RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 ACKR1Q16570 336 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 EEF1A1P5Q5VTE0 462 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 GPR139Q6DWJ6 353 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 ABLIM2Q6H8Q1 611 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 PRSS57Q6UWY2 283 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 USP51Q70EK9 711 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 THAP5Q7Z6K1 395 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 GPAT4Q86UL3 456 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 JAZF1Q86VZ6 243 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 UEVLDQ8IX04 471 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 LNX2Q8N448 690 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 OR4Q3Q8NH05 313 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 IGFBPL1Q8WX77 278 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 PIGTQ969N2 578 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 PIK3IP1Q96FE7 263 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 ERMAPQ96PL5 475 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 OPN3Q9H1Y3 402 aaPredicted RBP10.74□□□□□ -0.69
PTPRF-208ENST00000437607 UBTD1Q9HAC8 227 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 TVP23BQ9NYZ1 205 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 LRRC42Q9Y546 428 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 HSPE1-MOB4S4R3N1 261 aa10.74□□□□□ -0.69
PTPRF-208ENST00000437607 ABCA1O95477 2261 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 IGHV3-15A0A0B4J1V0 119 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 TEX13CA0A0J9YWL9 993 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 SLC22A20A6NK97 555 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 M0R3G1 203 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 XKRYO14609 159 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 SMAD7O15105 426 aaKnown RBP10.73□□□□□ -0.69
PTPRF-208ENST00000437607 DENRO43583 198 aaKnown RBP10.73□□□□□ -0.69
PTPRF-208ENST00000437607 SMNDC1O75940 238 aaKnown RBP eCLIP10.73□□□□□ -0.69
PTPRF-208ENST00000437607 VAMP5O95183 116 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 IGHMP01871 453 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 CRHP06850 196 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 TSPAN19P0C672 248 aa10.73□□□□□ -0.69
PTPRF-208ENST00000437607 FCGR2AP12318 317 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms