RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SLC16A7O60669 478 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PRB1P04280 392 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 QDPRP09417 244 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PGA4P0DJD7 388 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PGA3P0DJD8 388 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 ZNF823P16415 610 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 KLK2P20151 261 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 NPR2P20594 1047 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 BMP5P22003 454 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 GNLYP22749 145 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 CHRNB4P30926 498 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 POLR2IP36954 125 aaKnown RBP8.95□□□□□ -0.98
CD44-207ENST00000425428 SNRPGP62308 76 aaKnown RBP8.95□□□□□ -0.98
CD44-207ENST00000425428 ADARB1P78563 741 aaKnown RBP8.95□□□□□ -0.98
CD44-207ENST00000425428 CRMP1Q14194 572 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 C4orf17Q53FE4 359 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 SOWAHCQ53LP3 525 aaPredicted RBP8.95□□□□□ -0.98
CD44-207ENST00000425428 MESTQ5EB52 335 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 SLC35D3Q5M8T2 416 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 NXNL2Q5VZ03 156 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 FBXW9Q5XUX1 488 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 RTL6Q6ICC9 239 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PLBD1Q6P4A8 553 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PLXDC2Q6UX71 529 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 CPOQ8IVL8 374 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 C20orf196Q8IYI0 205 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 SLC37A3Q8NCC5 494 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 OR6K6Q8NGW6 343 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 CA5BP1Q8WTZ4 195 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 MUS81Q96NY9 551 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 SYT4Q9H2B2 425 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 OR51V1Q9H2C8 321 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 SEC61A2Q9H9S3 476 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 PLSCR4Q9NRQ2 329 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 VSX1Q9NZR4 365 aaPredicted RBP8.95□□□□□ -0.98
CD44-207ENST00000425428 POLR1DQ9Y2S0 133 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 FKBP7Q9Y680 259 aa8.95□□□□□ -0.98
CD44-207ENST00000425428 A0A1W2PPL8 197 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 SH3D21A4FU49 640 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 MSTNO14793 375 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 CD8BP10966 210 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 EPHA2P29317 976 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 FMO3P31513 532 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 CDKN2AP42771 156 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 SLC25A1P53007 311 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 CDH11P55287 796 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 POU4F2Q12837 409 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 FAPQ12884 760 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 TMED1Q13445 227 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 STK11Q15831 433 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 IGFBP7Q16270 282 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 SLC25A35Q3KQZ1 300 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 KLHL24Q6TFL4 600 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 NUFIP2Q7Z417 695 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 MRGPRGQ86SM5 289 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 FAM26EQ8N5C1 309 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 ZIC4Q8N9L1 334 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 CYB561A3Q8NBI2 242 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 NSMAFQ92636 917 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 HDAC2Q92769 488 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 MCHR2Q969V1 340 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 MRPL48Q96GC5 212 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 BBC3Q96PG8 261 aaPredicted RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 KCNK17Q96T54 332 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 USB1Q9BQ65 265 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 HDHD5Q9BXW7 423 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 ANKRD60Q9BZ19 345 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 CRLF2Q9HC73 371 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 GALNT8Q9NY28 637 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 SLC5A6Q9Y289 635 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 GPR52Q9Y2T5 361 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 RPL36Q9Y3U8 105 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 PCDHGB1Q9Y5G3 927 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 POLEQ07864 2286 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 ALPK2Q86TB3 2170 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 NBEAQ8NFP9 2946 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 IGSF10Q6WRI0 2623 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 H7C1C5 153 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 DHHO43323 396 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 PRKYO43930 277 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 ZNF432O94892 652 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 MYF6P23409 242 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 MPGP29372 298 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 KIR2DL2P43627 348 aaPredicted RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 LCN6P62502 163 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 ROR2Q01974 943 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 TEKQ02763 1124 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 P2RY6Q15077 328 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 GLB1L2Q8IW92 636 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 NPEPL1Q8NDH3 523 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 NANOS1Q8WY41 292 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 TMEM54Q969K7 222 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 DMRTA2Q96SC8 542 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 MRPL13Q9BYD1 178 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 NUAK2Q9H093 628 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 RACGAP1Q9H0H5 632 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 CHCHD3Q9NX63 227 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 ELOVL5Q9NYP7 299 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 WARS2Q9UGM6 360 aaKnown RBP8.94□□□□□ -0.98
CD44-207ENST00000425428 RNF6Q9Y252 685 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms