RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 OR10A6Q8NH74 314 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 OR6X1Q8NH79 312 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 PFN4Q8NHR9 129 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 HPS1Q92902 700 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ZNF566Q969W8 418 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ZNF347Q96SE7 839 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 PRSS27Q9BQR3 290 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ZNF385DQ9H6B1 395 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 NPHS2Q9NP85 383 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 MEPEQ9NQ76 525 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 NANSQ9NR45 359 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 TMEM38BQ9NVV0 291 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 TAAR3PQ9P1P4 343 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 FBXO9Q9UK97 447 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.91□□□□□ -0.825e-7■■■■■ 49.5
USP4-204ENST00000416417 TRAPPC13A5PLN9 417 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 ANGPT2O15123 496 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 PPIHO43447 177 aaKnown RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 FMO6PO60774 539 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 SERPINA5P05154 406 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 PGA4P0DJD7 388 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 PGA3P0DJD8 388 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 OR8G3PP0DMU2 310 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 SAGP10523 405 aaPredicted RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 FUT1P19526 365 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 RBMXP38159 391 aaKnown RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 EVX1P49640 407 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 GZMMP51124 257 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 CCL8P80075 99 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 ZP4Q12836 540 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 NKPD1Q17RQ9 610 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 AVPI1Q5T686 147 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 PIWIL3Q7Z3Z3 882 aaKnown RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 SNX32Q86XE0 403 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 NKAIN4Q8IVV8 208 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 LRRC18Q8N456 261 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 SLC30A7Q8NEW0 376 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 SLC26A7Q8TE54 656 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 RDH5Q92781 318 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 SLC25A44Q96H78 314 aaPredicted RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 MS4A5Q9H3V2 200 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 OCEL1Q9H607 264 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 METTL17Q9H7H0 456 aaPredicted RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 KAT8Q9H7Z6 458 aaKnown RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 INTS9Q9NV88 658 aaKnown RBP9.91□□□□□ -0.82
USP4-204ENST00000416417 SLC7A8Q9UHI5 535 aa9.91□□□□□ -0.82
USP4-204ENST00000416417 ANK2Q01484 3957 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 FBP2O00757 339 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 TCF21O43680 179 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 BCL10O95999 233 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 HIST1H2ABP04908 130 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 LCKP06239 509 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 ASAH2BP0C7U1 165 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 CDAP32320 146 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 PCGF2P35227 344 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 AQP2P41181 271 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 DVL1P1P54792 670 aaPredicted RBP9.9□□□□□ -0.82
USP4-204ENST00000416417 UGT2B15P54855 530 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 CLRN1P58418 232 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 MVKQ03426 396 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 RPL18Q07020 188 aaKnown RBP9.9□□□□□ -0.82
USP4-204ENST00000416417 RBBP4Q09028 425 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 RABL3Q5HYI8 236 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 LIPNQ5VXI9 398 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 RGS7BPQ6MZT1 257 aaPredicted RBP9.9□□□□□ -0.82
USP4-204ENST00000416417 HIST3H2AQ7L7L0 130 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 SLC16A14Q7RTX9 510 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 NANOGNBQ7Z5D8 188 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 GLCCI1Q86VQ1 547 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 DPP10Q8N608 796 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.9□□□□□ -0.82
USP4-204ENST00000416417 MOSPD2Q8NHP6 518 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 TMEM255BQ8WV15 326 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 HIST1H2ACQ93077 130 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 MCHR2Q969V1 340 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 CDH20Q9HBT6 801 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 C20orf141Q9NUB4 165 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 HIF1ANQ9NWT6 349 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 CACNG2Q9Y698 323 aa9.9□□□□□ -0.82
USP4-204ENST00000416417 IGKV1D-43A0A0B4J1Z2 117 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 A0A0G2JND7 137 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 B4DSR2 109 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 PIP5K1CO60331 668 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 RP2O75695 350 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 VENTXO95231 258 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 SLC2A10O95528 541 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 C8BP07358 591 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 GAAP10253 952 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 FUT4P22083 530 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 ACHEP22303 614 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 CCNOP22674 350 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 LSP1P33241 339 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 OR1E2P47887 323 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 LMO4P61968 165 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 RPS23P62266 143 aaKnown RBP9.89□□□□□ -0.83
USP4-204ENST00000416417 TSTQ16762 297 aaKnown RBP9.89□□□□□ -0.83
USP4-204ENST00000416417 VMACQ2NL98 169 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 SPATA46Q5T0L3 261 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 TMEM53Q6P2H8 277 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 DEF8Q6ZN54 512 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms