RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 CDH24Q86UP0 819 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 AQP11Q8NBQ7 271 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 OR10G2Q8NGC3 310 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 KCNK17Q96T54 332 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 TMEM204Q9BSN7 226 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 DGCR6LQ9BY27 220 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 KCNN2Q9H2S1 579 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 OR52D1Q9H346 318 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF556Q9HAH1 456 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 NRIP3Q9NQ35 241 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 CDH10Q9Y6N8 788 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 U3KQV3 271 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 MPDZO75970 2070 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 NOTCH2Q04721 2471 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 ARPC3O15145 178 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 PTP4A3O75365 173 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 TXNDC12O95881 172 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 NOS3P29474 1203 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 CAPZA2P47755 286 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 FOXG1P55316 489 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-206ENST00000414829 ERVK-25P63136 954 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 BSPH1Q075Z2 132 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 FHL1Q13642 323 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 RFX4Q33E94 735 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF770Q6IQ21 691 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-206ENST00000414829 SEZ6L2Q6UXD5 910 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 PAMR1Q6UXH9 720 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 RASSF6Q6ZTQ3 369 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 FAM122BQ7Z309 247 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 IGFN1Q86VF2 1251 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 MEX3DQ86XN8 651 aaKnown RBP12.81□□□□□ -0.36
LIMS1-206ENST00000414829 WDR31Q8NA23 367 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 SYT14Q8NB59 555 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 IL17RDQ8NFM7 739 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 OR9Q2Q8NGE9 314 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 GIPC3Q8TF64 312 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 MCHR2Q969V1 340 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 NRBF2Q96F24 287 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 TSPAN32Q96QS1 320 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 SNX18Q96RF0 628 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 BDH2Q9BUT1 245 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 FAIMQ9NVQ4 179 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 ARMC1Q9NVT9 282 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 TMEM38BQ9NVV0 291 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF346Q9UL40 294 aaKnown RBP12.81□□□□□ -0.36
LIMS1-206ENST00000414829 BAIAP2Q9UQB8 552 aa12.81□□□□□ -0.36
LIMS1-206ENST00000414829 UTP20O75691 2785 aaKnown RBP12.8□□□□□ -0.36
LIMS1-206ENST00000414829 A0A096LPE4 126 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 TEX13CA0A0J9YWL9 993 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 A0A1W2PPZ6 126 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 PRSS37A4D1T9 235 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 M0R1B8 84 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 SIAH2O43255 324 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 RAB36O95755 333 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 B4GALT1P15291 398 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 FASP25445 335 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 CD40P25942 277 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF83P51522 516 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 MRPS34P82930 218 aaKnown RBP12.8□□□□□ -0.36
LIMS1-206ENST00000414829 GSG1Q2KHT4 349 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 SLC36A2Q495M3 483 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 ADAM5Q6NVV9 412 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 ZFP1Q6P2D0 407 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 CD300LDQ6UXZ3 194 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 C22orf34Q6ZV56 151 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 JAZF1Q86VZ6 243 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 SLC22A24Q8N4F4 322 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 HDAC2Q92769 488 aaKnown RBP12.8□□□□□ -0.36
LIMS1-206ENST00000414829 DUS3LQ96G46 650 aaKnown RBP12.8□□□□□ -0.36
LIMS1-206ENST00000414829 SLC38A2Q96QD8 506 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 WACQ9BTA9 647 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 IFT27Q9BW83 186 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 C1orf198Q9H425 327 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-206ENST00000414829 KIF17Q9P2E2 1029 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 CRNNQ9UBG3 495 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-206ENST00000414829 ADAM18Q9Y3Q7 739 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 AP4S1Q9Y587 144 aa12.8□□□□□ -0.36
LIMS1-206ENST00000414829 ABCD4O14678 606 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 HS3ST1O14792 307 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 ARHGEF9O43307 516 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 PTHP01270 115 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 IGKV3-15P01624 115 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 CRYAAP02489 173 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 RAF1P04049 648 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 ANXA8P13928 327 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 CBR1P16152 277 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 DNASE1P24855 282 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 CRABP1P29762 137 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 RUNX1T1Q06455 604 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 KEAP1Q14145 624 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 PHYHD1Q5SRE7 291 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 LRFN4Q6PJG9 635 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 SLC22A25Q6T423 547 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 FBXW5Q969U6 566 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 NMD3Q96D46 503 aaKnown RBP12.79□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF837Q96EG3 531 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-206ENST00000414829 Q96M85 177 aa12.79□□□□□ -0.36
LIMS1-206ENST00000414829 ERMAPQ96PL5 475 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-206ENST00000414829 HS3ST6Q96QI5 342 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms