RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ACVR1BP36896 505 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 RAP1BP61224 184 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 RAP1AP62834 184 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 KEAP1Q14145 624 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 GK3PQ14409 553 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 C20orf204Q6ZNR8 217 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 ARIH2OSQ8N7S6 290 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 FAM169BQ8N8A8 192 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 ZNF519Q8TB69 540 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 FNDC8Q8TC99 324 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 NMD3Q96D46 503 aaKnown RBP18.96■□□□□ 0.63
CLN3-207ENST00000395653 REEP1Q9H902 201 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 CCM2LQ9NUG4 571 aaPredicted RBP18.96■□□□□ 0.63
CLN3-207ENST00000395653 CRNNQ9UBG3 495 aaPredicted RBP18.96■□□□□ 0.63
CLN3-207ENST00000395653 CCDC168Q8NDH2 2452 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 HS3ST1O14792 307 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 ENTPD5O75356 428 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 ATE1O95260 518 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 B4GALT1P15291 398 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 GSSP48637 474 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 ERVK-25P63136 954 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 TUBA1BP68363 451 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 TUBA4AP68366 448 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 C3orf36Q3SXR2 165 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 C10orf128Q5T292 105 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 PGBD2Q6P3X8 592 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 TUBA1AQ71U36 451 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 KBTBD8Q8NFY9 601 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 NRIP3Q9NQ35 241 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 TMEM38BQ9NVV0 291 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 GRHPRQ9UBQ7 328 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 ADAM18Q9Y3Q7 739 aa18.95■□□□□ 0.62
CLN3-207ENST00000395653 SAMHD1Q9Y3Z3 626 aaKnown RBP18.95■□□□□ 0.62
CLN3-207ENST00000395653 RAI1Q7Z5J4 1906 aaPredicted RBP18.95■□□□□ 0.62
CLN3-207ENST00000395653 IGKV3-15P01624 115 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 ZNF84P51523 738 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 IST1P53990 364 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 FXYD6P3P58550 94 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 CD47Q08722 323 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 TSPAN31Q12999 210 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 NRN1LQ496H8 165 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 ZNF770Q6IQ21 691 aaPredicted RBP18.94■□□□□ 0.62
CLN3-207ENST00000395653 SMARCD3Q6STE5 483 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 THSD4Q6ZMP0 1018 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 FAM122BQ7Z309 247 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 ZNF611Q8N823 705 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 LILRB1Q8NHL6 650 aaPredicted RBP18.94■□□□□ 0.62
CLN3-207ENST00000395653 GNPDA2Q8TDQ7 276 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 AKAP1Q92667 903 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLN3-207ENST00000395653 SLC38A2Q96QD8 506 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 YY1AP1Q9H869 796 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 VNN3Q9NY84 501 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 OTOGQ6ZRI0 2925 aa18.94■□□□□ 0.62
CLN3-207ENST00000395653 CREBBPQ92793 2442 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 SHISA9B4DS77 424 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 CCNB2O95067 398 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 CST1P01037 141 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 CBR1P16152 277 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 CAPZA2P47755 286 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 MYBPC1Q00872 1141 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 ZNF672Q499Z4 452 aaPredicted RBP18.93■□□□□ 0.62
CLN3-207ENST00000395653 THEM4Q5T1C6 240 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 GPR139Q6DWJ6 353 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 DPY19L2P2Q6ZN68 376 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 CCDC121Q6ZUS5 278 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 PIAS4Q8N2W9 510 aaPredicted RBP18.93■□□□□ 0.62
CLN3-207ENST00000395653 OR9Q2Q8NGE9 314 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 FANK1Q8TC84 345 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 NANOS1Q8WY41 292 aaKnown RBP18.93■□□□□ 0.62
CLN3-207ENST00000395653 MBD6Q96DN6 1003 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 ZNF570Q96NI8 536 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 RBP7Q96R05 134 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 OR52D1Q9H346 318 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 U3KQV3 271 aa18.93■□□□□ 0.62
CLN3-207ENST00000395653 ROS1P08922 2347 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 IGHV1-18A0A0C4DH31 117 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 ZNF503-AS2A6NEH8 195 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 IGLV1-44P01699 117 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 OR8G3PP0DMU2 310 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 CD53P19397 219 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 SDHAP31040 664 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 ARR3P36575 388 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 PPP1R8Q12972 351 aaKnown RBP18.92■□□□□ 0.62
CLN3-207ENST00000395653 MICAQ29983 383 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 RFX4Q33E94 735 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 SLC22A25Q6T423 547 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 ASRGL1Q7L266 308 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 SLC22A24Q8N4F4 322 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 PAPD5Q8NDF8 572 aaKnown RBP18.92■□□□□ 0.62
CLN3-207ENST00000395653 FBXW5Q969U6 566 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 Q96M85 177 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 B3GNT2Q9NY97 397 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 IL20RAQ9UHF4 553 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 MYO9AB2RTY4 2548 aa18.92■□□□□ 0.62
CLN3-207ENST00000395653 XKRYO14609 159 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 ARHGEF9O43307 516 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 AHCYL1O43865 530 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 MGRN1O60291 552 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 FARS2O95363 451 aaKnown RBP18.91■□□□□ 0.62
CLN3-207ENST00000395653 SLC2A10O95528 541 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms