RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 HRH3Q9Y5N1 445 aa12.6□□□□□ -0.39
SNCA-204ENST00000394989 A0A1B0GTH9 108 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 SLC25A12O75746 678 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 HEXBP07686 556 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 SF3A2Q15428 464 aaKnown RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 HSD17B12Q53GQ0 312 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 C1orf140Q5VVS0 124 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ESPNLQ6ZVH7 1005 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 OVCH1Q7RTY7 1134 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 MAMDC2Q7Z304 686 aaPredicted RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 DPY19L4Q7Z388 723 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 GRINAQ7Z429 371 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 BEST4Q8NFU0 473 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 CCDC74BQ96LY2 380 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ADAD1Q96M93 576 aaKnown RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 DERL3Q96Q80 235 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 AMELYQ99218 206 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.59□□□□□ -0.39
SNCA-204ENST00000394989 TAS2R10Q9NYW0 307 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ZNF879B4DU55 563 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 GDF9O60383 454 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ALOX12BO75342 701 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 DXOO77932 396 aaKnown RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 MT-ATP6P00846 226 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ARSBP15848 533 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 IL11P20809 199 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 AHCYP23526 432 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 TALDO1P37837 337 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 AGFG1P52594 562 aaKnown RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 ACKR1Q16570 336 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 UBALD2Q8IYN6 164 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 MAFAQ8NHW3 353 aaPredicted RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 ZNF519Q8TB69 540 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ZNF431Q8TF32 576 aaPredicted RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 MRPL48Q96GC5 212 aaKnown RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 THAP7Q9BT49 309 aaPredicted RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 SLC25A18Q9H1K4 315 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 AKIRIN1Q9H9L7 192 aaPredicted RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 PPIEQ9UNP9 301 aaKnown RBP12.59□□□□□ -0.39
SNCA-204ENST00000394989 A0A1W2PPC1 479 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 A8MVM7 634 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 PRKAR1AP10644 381 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 ALOX5APP20292 161 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 SLC26A5P58743 744 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 MAB21L1Q13394 359 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 BTN1A1Q13410 526 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 BCL2L15Q5TBC7 163 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 SLC6A19Q695T7 634 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 KRT74Q7RTS7 529 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 PLCZ1Q86YW0 608 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 OR2I1PQ8NGU4 316 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 OR6N2Q8NGY6 317 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 FOXN4Q96NZ1 517 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 BRD7Q9NPI1 651 aa12.59□□□□□ -0.39
SNCA-204ENST00000394989 RENP00797 406 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 TDGF1P13385 188 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 DCDP81605 110 aaKnown RBP12.58□□□□□ -0.4
SNCA-204ENST00000394989 INSM1Q01101 510 aaPredicted RBP12.58□□□□□ -0.4
SNCA-204ENST00000394989 FCN2Q15485 313 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 BICRALQ6AI39 1079 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 MAMSTRQ6ZN01 415 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 CHMP1BQ7LBR1 199 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 BMPERQ8N8U9 685 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 HAVCR2Q8TDQ0 301 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 METTL21AQ8WXB1 218 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 SPSB2Q99619 263 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 SUSD2Q9UGT4 822 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 CCDC163A0A0D9SF12 145 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 VSTM2BA6NLU5 285 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 INMT-MINDY4F8WBC2 141 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 C1QBP02746 253 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 HRGP04196 525 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 ADRB1P08588 477 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 HOXA6P31267 233 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 STK11Q15831 433 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 FAM69BQ5VUD6 431 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 PAPD4Q6PIY7 484 aaKnown RBP12.58□□□□□ -0.4
SNCA-204ENST00000394989 KCTD20Q7Z5Y7 419 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 HGDQ93099 445 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 C8orf44Q96CB5 159 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 ABRACLQ9P1F3 81 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 LAMP5Q9UJQ1 280 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 RARRES3Q9UL19 164 aa12.58□□□□□ -0.4
SNCA-204ENST00000394989 PRSS37A4D1T9 235 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 FTCDNL1E5RQL4 147 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 PLPP3O14495 311 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 EEF1E1O43324 174 aaKnown RBP12.57□□□□□ -0.4
SNCA-204ENST00000394989 HLA-DOBP13765 273 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 RPL27P61353 136 aaKnown RBP12.57□□□□□ -0.4
SNCA-204ENST00000394989 STPG1Q5TH74 334 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 MZT2BQ6NZ67 158 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 LRRC69Q6ZNQ3 347 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 ESX1Q8N693 406 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 ZNF417Q8TAU3 575 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 NUBPLQ8TB37 319 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 RFT1Q96AA3 541 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 ZNF587Q96SQ5 575 aaPredicted RBP12.57□□□□□ -0.4
SNCA-204ENST00000394989 KCNG2Q9UJ96 466 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 C19orf67A6NJJ6 358 aa12.57□□□□□ -0.4
SNCA-204ENST00000394989 SLC43A1O75387 559 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms