RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ZNF813Q6ZN06 617 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 LINC00696Q6ZRV3 163 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 UBTD2Q8WUN7 234 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC35E1Q96K37 410 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 GMLQ99445 158 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 PAPLNO95428 1278 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 UBE2G1P62253 170 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF836Q6ZNA1 936 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 PRSS35Q8N3Z0 413 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 RLN3Q8WXF3 142 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 MYO18AQ92614 2054 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 GRPP07492 148 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 FURINP09958 794 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 WNT7BP56706 349 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ADIRFQ15847 76 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 TAF9Q16594 264 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 AVPI1Q5T686 147 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 CCDC71Q8IV32 467 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 FGGYQ96C11 551 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 PDLIM7Q9NR12 457 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 LRRC37A3O60309 1634 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 MBLAC1A4D2B0 266 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 HPNP05981 417 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 GJA4P35212 333 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 OR8G1Q15617 311 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ZMAT1Q5H9K5 638 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 TAS1R1Q7RTX1 841 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 PNPLA1Q8N8W4 532 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 LIPHQ8WWY8 451 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 YIPF5Q969M3 257 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 OBP2AQ9NY56 170 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 KLK4Q9Y5K2 254 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC35E2P0CK97 266 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 DEFB103AP81534 67 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ILKQ13418 452 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 KHDC1LQ5JSQ8 128 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 LGI3Q8N145 548 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 OR5D18Q8NGL1 313 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ATOH1Q92858 354 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 SUCNR1Q9BXA5 334 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 C12orf49Q9H741 205 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 CSNK1G1Q9HCP0 422 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF331Q9NQX6 463 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 CA5BQ9Y2D0 317 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 NXPH3O95157 252 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 LEXMQ3ZCV2 418 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 NMNAT3Q96T66 252 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 PLK3Q9H4B4 646 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM53CQ9NYF3 392 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 SRMP19623 302 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 DAPP51397 102 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 GNB1P62873 340 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 FOXK2Q01167 660 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 EDDM3AQ14507 147 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 VN1R2Q8NFZ6 395 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 RHOXF1Q8NHV9 184 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 APH1AQ96BI3 265 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 LOXHD1Q8IVV2 1947 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 LRP6O75581 1613 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 A0A1B0GTW7 788 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 HLA-FP30511 346 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 C4orf17Q53FE4 359 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 NLRP8Q86W28 1048 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 LAX1Q8IWV1 398 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 OR52I1Q8NGK6 324 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 ARRDC3Q96B67 414 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 SEC22AQ96IW7 307 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 AQP7O14520 342 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 CSF3P09919 207 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 VEGFBP49765 207 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 RTL8BQ17RB0 113 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 LINC00346Q8IVM7 164 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 OR4Q3Q8NH05 313 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM3DQ96BQ1 224 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 NEURL3Q96EH8 262 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC25A21Q9BQT8 299 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 PSORS1C1Q9UIG5 152 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 DIMT1Q9UNQ2 313 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 SYT5O00445 386 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 CSO75390 466 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 MT-ND4LP03901 98 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 MAKP20794 623 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 MAP2K6P52564 334 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 CLDN12P56749 244 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM200AQ86VY9 491 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 SEMA6DQ8NFY4 1073 aa11.8□□□□□ -0.52
CCDC88C-204ENST00000389857 CT45A10P0DMU9 189 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 OR6M1Q8NGM8 313 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 M1APQ8TC57 530 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 QRSL1Q9H0R6 528 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 EMCNQ9ULC0 261 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 EXO1Q9UQ84 846 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 THBS1P07996 1170 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 CTXN2P0C2S0 81 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 DUSP1P28562 367 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 ADGRG3Q86Y34 549 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 OR6K3Q8NGY3 331 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 NRG4Q8WWG1 115 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 CDCP1Q9H5V8 836 aa11.79□□□□□ -0.52
CCDC88C-204ENST00000389857 GLCEO94923 617 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms