RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 VPS37BQ9H9H4 285 aa1.36□□□□□ -2.19
VPS13A-206ENST00000376646 FGF20Q9NP95 211 aaPredicted RBP1.36□□□□□ -2.19
VPS13A-206ENST00000376646 LSM7Q9UK45 103 aaKnown RBP1.36□□□□□ -2.19
VPS13A-206ENST00000376646 PITPNC1Q9UKF7 332 aa1.36□□□□□ -2.19
VPS13A-206ENST00000376646 UNC79Q9P2D8 2635 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CIB4A0PJX0 185 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 PINLYPA6NC86 204 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF726A6NNF4 738 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 FAM166BA8MTA8 275 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 TCP11X1B4DZS4 312 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 TRIM49D1C9J1S8 452 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 F6UB75 175 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 H3BNH8 94 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RAB29O14966 203 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CLOCKO15516 846 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 EIF3GO75821 320 aaKnown RBP eCLIP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 OR2J3O76001 311 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 AGTP01019 485 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 FTH1P02794 183 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CRISP2P16562 243 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 NSG1P42857 185 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 TFPI2P48307 235 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 TMED10P49755 219 aaKnown RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LHX2P50458 406 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CCR8P51685 355 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 PRRX1P54821 245 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 UGT2B15P54855 530 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 YWHAGP61981 247 aaKnown RBP eCLIP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ACTA2P62736 377 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RPS21P63220 83 aaKnown RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ACTG2P63267 376 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ACTC1P68032 377 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ACTA1P68133 377 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF92Q03936 586 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 SGCAQ16586 387 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ZBED5Q49AG3 693 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LY6G6FQ5SQ64 297 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RAET1LQ5VY80 246 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 METAP1DQ6UB28 335 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 Q6ZSR3 168 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LINC00173Q6ZV60 143 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RNF175Q8N4F7 328 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 EID2Q8N6I1 236 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 Q8N9L7 120 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 NPBQ8NG41 125 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 OR10G9Q8NGN4 311 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 OR6X1Q8NH79 312 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 DTX3LQ8TDB6 740 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 MCOLN3Q8TDD5 553 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 GPR151Q8TDV0 419 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ACMSDQ8TDX5 336 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CXorf40AQ8TE69 158 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 GEMIN6Q8WXD5 167 aaKnown RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 PIBF1Q8WXW3 757 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ELMO1Q92556 727 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 IL22RA2Q969J5 263 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 TMEM54Q969K7 222 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 DNAJC19Q96DA6 116 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RNF185Q96GF1 192 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 PANX1Q96RD7 426 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 SLC29A1Q99808 456 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ILKAPQ9H0C8 392 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CWH43Q9H720 699 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 PCYOX1Q9UHG3 505 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 NUFIP1Q9UHK0 495 aaKnown RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 KIAA1257Q9ULG3 409 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 F11RQ9Y624 299 aaKnown RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 SCN2AQ99250 2005 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 MYO10Q9HD67 2058 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CEMIPQ8WUJ3 1361 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LRRIQ3A6PVS8 624 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 C9JVG2 144 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LAD1O00515 517 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 DNALI1O14645 258 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 EIF3HO15372 352 aaKnown RBP eCLIP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 NR2C1P13056 603 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 FOLR1P15328 257 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RFX3P48380 749 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CCR6P51684 374 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CCNHP51946 323 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CRISP3P54108 245 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 MPPED2Q15777 294 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 SOHLH1Q5JUK2 328 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ANKRD26P1Q6NSI1 321 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 CCDC73Q6ZRK6 1079 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 MKXQ8IYA7 352 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LIX1Q8N485 282 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF433Q8N7K0 673 aaPredicted RBP1.35□□□□□ -2.19
VPS13A-206ENST00000376646 FBXL13Q8NEE6 735 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 OR7G2Q8NG99 324 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 OR5B3Q8NH48 314 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 RHEBL1Q8TAI7 183 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 FAM81AQ8TBF8 368 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 SLC7A13Q8TCU3 470 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 LRRC58Q96CX6 371 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 TSNARE1Q96NA8 513 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 GABARAPL3Q9BY60 117 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 DNTTIP1Q9H147 329 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 OR51M1Q9H341 326 aa1.35□□□□□ -2.19
VPS13A-206ENST00000376646 NEK6Q9HC98 313 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms