RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 POLE3Q9NRF9 147 aa7.09□□□□□ -1.27
HMGB1P39-201ENST00000366304 NPTNQ9Y639 398 aa7.09□□□□□ -1.27
HMGB1P39-201ENST00000366304 MS4A18H0YCH9 400 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 HMGN4O00479 90 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 AZIN1O14977 448 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 RAB36O95755 333 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 LCKP06239 509 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 PPIAL4GP0DN37 164 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 PHBP35232 272 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 UCP2P55851 309 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 DBPQ10586 325 aaPredicted RBP7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 PDCD1Q15116 288 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 MS4A18Q3C1V0 323 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 SPATA46Q5T0L3 261 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 ATG16L1Q676U5 607 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 OR4F3Q6IEY1 312 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 ZNF620Q6ZNG0 422 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 RNF165Q6ZSG1 346 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 LRRC28Q86X40 367 aaPredicted RBP7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 PIK3C3Q8NEB9 887 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 MFSD8Q8NHS3 518 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 MGARPQ8TDB4 240 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 MZB1Q8WU39 189 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 SNX33Q8WV41 574 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 OIT3Q8WWZ8 545 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 TAAR8Q969N4 342 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 UTP4Q969X6 686 aaKnown RBP7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 NEURL3Q96EH8 262 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 SH3GL3Q99963 347 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 DUSP26Q9BV47 211 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 FAM107BQ9H098 131 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 EXD2Q9NVH0 621 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 SLCO1C1Q9NYB5 712 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 KLHL21Q9UJP4 597 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 TMED5Q9Y3A6 229 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 SACSQ9NZJ4 4579 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 STAB2Q8WWQ8 2551 aa7.08□□□□□ -1.28
HMGB1P39-201ENST00000366304 IGKV1D-42A0A075B6H8 117 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 IGHV2-70DA0A0C4DH43 119 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 CDHR4A6H8M9 788 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 K7EIL1 84 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 PIP5K1CO60331 668 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 SHOX2O60902 331 aaPredicted RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 PEX11AO75192 247 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 MFN2O95140 757 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 IGHV4-59P01825 116 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 CHRNGP07510 517 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 WNT2P09544 360 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 FSTP19883 344 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 CBLP22681 906 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 WNT5AP41221 380 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 PAFAH1B1P43034 410 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 HOXC5Q00444 222 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 RBBP4Q09028 425 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 CAMK2DQ13557 499 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 C1DQ13901 141 aaKnown RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 GSTA3Q16772 222 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 PGS1Q32NB8 556 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 GPAT3Q53EU6 434 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 XKR7Q5GH72 579 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 FAM209AQ5JX71 171 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 ZNF836Q6ZNA1 936 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 ANKRD46Q86W74 232 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 VRK2Q86Y07 508 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 ZNF101Q8IZC7 436 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 CLIP4Q8N3C7 705 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 TMEM86BQ8N661 226 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 ZSCAN4Q8NAM6 433 aaPredicted RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 ICA1LQ8NDH6 482 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 IPCEF1Q8WWN9 437 aaPredicted RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 C11orf40Q8WZ69 217 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 ITFG2Q969R8 447 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 FAM46AQ96IP4 442 aaKnown RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 CITED4Q96RK1 184 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 DIRC2Q96SL1 478 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 NAPGQ99747 312 aaPredicted RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 FOXB1Q99853 325 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 TOR3AQ9H497 397 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 NOX4Q9NPH5 578 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 TMEM106BQ9NUM4 274 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 NECAP2Q9NVZ3 263 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 GAR1Q9NY12 217 aaKnown RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 POFUT2Q9Y2G5 429 aa7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 UTP11Q9Y3A2 253 aaKnown RBP7.07□□□□□ -1.28
HMGB1P39-201ENST00000366304 TANC2Q9HCD6 1990 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 DNAH1Q9P2D7 4330 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 LOC102725191A0A1B0GVB3 256 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 A0A1W2PPM1 405 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 SLC22A23A1A5C7 686 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 CEACAM18A8MTB9 384 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 ERLIN1O75477 346 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 UBL3O95164 117 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 ZNF205O95201 554 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 AHSA1O95433 338 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 SNAP29O95721 258 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 MT-ND5P03915 603 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 SFTPBP07988 381 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 ADH4P08319 380 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 MYZAPP0CAP1 466 aa7.06□□□□□ -1.28
HMGB1P39-201ENST00000366304 MYL2P10916 166 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms