RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SGCZQ96LD1 299 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 MYCBPQ99417 103 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 UTP23Q9BRU9 249 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 DEFB126Q9BYW3 111 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 RBM38Q9H0Z9 239 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 TP63Q9H3D4 680 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ANKRD10Q9NXR5 420 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 FLRT3Q9NZU0 649 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF229Q9UJW7 825 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 SIGLEC7Q9Y286 467 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 YARS2Q9Y2Z4 477 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 PCDHGB5Q9Y5G0 923 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ATP23Q9Y6H3 246 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 CNTRLQ7Z7A1 2325 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 EXPH5Q8NEV8 1989 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ANK2Q01484 3957 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 SCN2AQ99250 2005 aa6.21□□□□□ -1.41
VPS13A-201ENST00000355766 A0A087WZY1 265 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NPIPA5A0A0B4J1W7 369 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 A0A1B0GTH9 108 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NPIPB13A6NJU9 1138 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 A6NNC1 897 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 A8MUA0 341 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 EFCAB9A8MZ26 197 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 KDM4EB2RXH2 506 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NPIPB4C9JG80 1138 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 INAFM1C9JVW0 142 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NPIPA7E9PJI5 369 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ARPC3O15145 178 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ZNF208O43345 1280 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 HCRTR2O43614 444 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 OR2T1O43869 369 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NME2P1O60361 137 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 CDC14BO60729 498 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 FAM20BO75063 409 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SLC25A12O75746 678 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NEURL1O76050 574 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SEC14L2O76054 403 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SEC24DO94855 1032 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 IFNGP01579 166 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SP1P08047 785 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 TSPAN19P0C672 248 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 GKN3PP0CG01 181 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NPIPA8P0DM63 369 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 POU2F1P14859 743 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SLC6A6P31641 620 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 EIF1P41567 113 aaKnown RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 RFX3P48380 749 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 CLK1P49759 484 aaKnown RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 POLR2HP52434 150 aaKnown RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 TMBIM6P55061 237 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ZNF117Q03924 483 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 RAB40BQ12829 278 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 GINS1Q14691 196 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 CD226Q15762 336 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 BTBD16Q32M84 506 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ZNF791Q3KP31 576 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SLC25A53Q5H9E4 307 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 FAM209AQ5JX71 171 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 UBE2UQ5VVX9 321 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 FOXB2Q5VYV0 432 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NXNL2Q5VZ03 156 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SLC25A25Q6KCM7 469 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 H3F3CQ6NXT2 135 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ARSKQ6UWY0 536 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 WDR88Q6ZMY6 472 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 PTCHD4Q6ZW05 846 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NKAIN4Q8IVV8 208 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SPARTQ8N0X7 666 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ZNF540Q8NDQ6 660 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 OR13F1Q8NGS4 319 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 B4GALNT2Q8NHY0 566 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 CNIH3Q8TBE1 160 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 RAB2BQ8WUD1 216 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 MUL1Q969V5 352 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 NTNG2Q96CW9 530 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SGTBQ96EQ0 304 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 MRGPRX4Q96LA9 322 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 DOK1Q99704 481 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 COPS4Q9BT78 406 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 FKRPQ9H9S5 495 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 MEPEQ9NQ76 525 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 CMC2Q9NRP2 79 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 INPP5EQ9NRR6 644 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 TBC1D23Q9NUY8 699 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 GALNT8Q9NY28 637 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ZNF226Q9NYT6 803 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 CNIH4Q9P003 139 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SLC6A5Q9Y345 797 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 ZNF337Q9Y3M9 751 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 WIF1Q9Y5W5 379 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 SPIN1Q9Y657 262 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-201ENST00000355766 MXRA5Q9NR99 2828 aa6.21□□□□□ -1.42
VPS13A-201ENST00000355766 TRBV23-1A0A0A0MS06 115 aa6.2□□□□□ -1.42
VPS13A-201ENST00000355766 TRIM64BA6NI03 449 aa6.2□□□□□ -1.42
VPS13A-201ENST00000355766 RIIAD1A6NNX1 92 aa6.2□□□□□ -1.42
VPS13A-201ENST00000355766 A8MVM7 634 aa6.2□□□□□ -1.42
VPS13A-201ENST00000355766 BHLHE40O14503 412 aa6.2□□□□□ -1.42
VPS13A-201ENST00000355766 CDC42EP2O14613 210 aa6.2□□□□□ -1.42
VPS13A-201ENST00000355766 IMPA2O14732 288 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms