RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 A0A1W2PQL4 384 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 TMEM72A0PK05 275 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PATE3B3GLJ2 98 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 BOLA2-SMG1P6H3BVE0 249 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SRPX2O60687 465 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 RAMP1O60894 148 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 WISP2O76076 250 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ACTL6BO94805 426 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF432O94892 652 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GPANK1O95872 356 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SERPIND1P05546 499 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 COX6A1P12074 109 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CSNK2A2P19784 350 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 ABCD3P28288 659 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TNFSF8P32971 234 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SSR2P43308 183 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MAGEB1P43366 347 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PSMD7P51665 324 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PPP5CP53041 499 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR10A3P58181 314 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 VSX2P58304 361 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZP4Q12836 540 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GINS1Q14691 196 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GUSBP1Q15486 140 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 INPP5JQ15735 1006 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 SLC25A35Q3KQZ1 300 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 KLHL12Q53G59 568 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ARMCX4Q5H9R4 360 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF311Q5JNZ3 666 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PHYHD1Q5SRE7 291 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 C16orf47Q6ZP98 133 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 PLEKHG7Q6ZR37 379 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SHFQ7M4L6 423 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ANKRD37Q7Z713 158 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GLCCI1Q86VQ1 547 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 P2RY8Q86VZ1 359 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR6V1Q8N148 313 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FAM109AQ8N4B1 249 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PAQR4Q8N4S7 273 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF540Q8NDQ6 660 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR13C5Q8NGS8 318 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR4C6Q8NH72 309 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GPR151Q8TDV0 419 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 HMGB4Q8WW32 186 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TMEM239Q8WW34 195 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 UPRTQ96BW1 309 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TMEM80Q96HE8 168 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TXNDC15Q96J42 360 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SAMD8Q96LT4 415 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF578Q96N58 590 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 LRFN5Q96NI6 719 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SNX18Q96RF0 628 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MNTQ99583 582 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LPAR4Q99677 370 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DCUN1D5Q9BTE7 237 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MLST8Q9BVC4 326 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NLNQ9BYT8 704 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 WWTR1Q9GZV5 400 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 HOXD1Q9GZZ0 328 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OSGEPL1Q9H4B0 414 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 Q9H521 79 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ARMC7Q9H6L4 198 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SP140LQ9H930 580 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ANKHQ9HCJ1 492 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DDX28Q9NUL7 540 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 NLGN3Q9NZ94 848 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 KCNG2Q9UJ96 466 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FBXO9Q9UK97 447 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 HSF4Q9ULV5 492 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ADAM18Q9Y3Q7 739 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FLVCR1Q9Y5Y0 555 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 UBR5O95071 2799 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 IGHV1-45A0A0A0MS14 117 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LOC105378220A0A1B0GUY1 285 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 FAM183AA6NL82 134 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR5K4A6NMS3 321 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 EFCAB9A8MZ26 197 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 EVPLLA8MZ36 301 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CCRL2O00421 344 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 RNF13O43567 381 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SPRY2O43597 315 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 BCL10O95999 233 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 IL1AP01583 271 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 EIF4EP06730 217 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 DBIP07108 87 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 CELA2AP08217 269 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SBK2P0C263 348 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ITGA2P17301 1181 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PTNP21246 168 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NT5EP21589 574 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OTX1P32242 354 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 MPIP34949 423 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PPICP45877 212 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 RFX3P48380 749 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PTH2RP49190 550 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 EVX1P49640 407 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 BCAP31P51572 246 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SLC25A1P53007 311 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CAV3P56539 151 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 WNT4P56705 351 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms