RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CXXC5Q7LFL8 322 aaKnown RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 SIAH3Q8IW03 269 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 LNX2Q8N448 690 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 OR4F15Q8NGB8 312 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 CPNE4Q96A23 557 aaPredicted RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 NMD3Q96D46 503 aaKnown RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 EMC7Q9NPA0 242 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 IL20Q9NYY1 176 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 B3GAT1Q9P2W7 334 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 UPB1Q9UBR1 384 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 RSL24D1Q9UHA3 163 aaKnown RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 FIGNL2A6NMB9 653 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 UPK3AO75631 287 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 LYZL6O75951 148 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 B4GALT1P15291 398 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 CTLA4P16410 223 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 CCNOP22674 350 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 GNLYP22749 145 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 MVKQ03426 396 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 COX10Q12887 443 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ITGADQ13349 1161 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 FHL1Q13642 323 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 TMEM81Q6P7N7 255 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ZNF540Q8NDQ6 660 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ANKK1Q8NFD2 765 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 OR10H4Q8NGA5 316 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ZNF420Q8TAQ5 688 aaPredicted RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 PPP1R14BQ96C90 147 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 SLC19A3Q9BZV2 496 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 CRLF2Q9HC73 371 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 PRSS50Q9UI38 385 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 B3GALT5Q9Y2C3 310 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 HIF3AQ9Y2N7 669 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 CORINQ9Y5Q5 1042 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 HTR3EA5X5Y0 456 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 AQP7P3A6NL99 342 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 H3BSA7 217 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 CCL21O00585 134 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 PTP4A3O75365 173 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ACTL6AO96019 429 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 MT-ATP6P00846 226 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 HSMCR30P0CW71 290 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 HOXB6P17509 224 aaKnown RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 CDH11P55287 796 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ADARB1P78563 741 aaKnown RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 THAP5Q7Z6K1 395 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 LINC00471Q8N535 108 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 NAXEQ8NCW5 288 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 ZNF566Q969W8 418 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 POTEKPQ9BYX7 375 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 OPN3Q9H1Y3 402 aaPredicted RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 COA3Q9Y2R0 106 aaPredicted RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 CELSR2Q9HCU4 2923 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 H0YAE9 185 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 BHLHE40O14503 412 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 KLF4O43474 513 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 QDPRP09417 244 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 TTKP33981 857 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 GGT2P36268 569 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 PRSS12P56730 875 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 RPL27P61353 136 aaKnown RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 ESRRGP62508 458 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 SLC25A53Q5H9E4 307 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 LHFPL3Q86UP9 236 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 DOLPP1Q86YN1 238 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 SLC37A3Q8NCC5 494 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 OR6N2Q8NGY6 317 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 HDAC2Q92769 488 aaKnown RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 ULBP2Q9BZM5 246 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 MRPL39Q9NYK5 338 aaKnown RBP8.18□□□□□ -1.1
USP4-202ENST00000351842 ZNF226Q9NYT6 803 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 DOPEY1Q5JWR5 2465 aa8.18□□□□□ -1.1
USP4-202ENST00000351842 A0A087WXM4 84 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 ZAR1LA6NP61 321 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 SELENOFO60613 162 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 EIF1BO60739 113 aaKnown RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 RAD51DO75771 328 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 IFNGP01579 166 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 IL2RAP01589 272 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 SPARCP09486 303 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 JUNBP17275 347 aaPredicted RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 PAICSP22234 425 aaKnown RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 DCKP27707 260 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 C21orf33P30042 268 aaPredicted RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 CSNK1A1P48729 337 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 SLC17A1Q14916 467 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 TMEM44Q2T9K0 475 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 PHYHD1Q5SRE7 291 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 TSPO2Q5TGU0 170 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 CREB3L2Q70SY1 520 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 OR6V1Q8N148 313 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 ARIH2OSQ8N7S6 290 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 POLR2J2Q9GZM3 115 aaKnown RBP8.17□□□□□ -1.1
USP4-202ENST00000351842 GABARAPL1Q9H0R8 117 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 USE1Q9NZ43 259 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 KLHL9Q9P2J3 617 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 ITGB1BP2Q9UKP3 347 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP4-202ENST00000351842 FLVCR1Q9Y5Y0 555 aa8.17□□□□□ -1.1
USP4-202ENST00000351842 CIB4A0PJX0 185 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms