RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 ZNF814B7Z6K7 855 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MS4A18H0YCH9 400 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 KLRC4-KLRK1H3BQV0 150 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 PLPP3O14495 311 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ENTPD6O75354 484 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 TRAPPC6AO75865 159 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 F13BP05160 661 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 KLK2P20151 261 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 SLC6A6P31641 620 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 P2RY4P51582 365 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 CLDN15P56746 228 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 RAC1P63000 192 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 FAPQ12884 760 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ZNF79Q15937 498 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MS4A18Q3C1V0 323 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MZT2BQ6NZ67 158 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 DPY19L2P2Q6ZN68 376 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 CCDC28AQ8IWP9 274 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 SLC43A2Q8N370 569 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 OR14L1PQ8NHC6 308 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 TMEM163Q8TC26 289 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 SLC25A43Q8WUT9 341 aaPredicted RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 TMEM80Q96HE8 168 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 OR5B2Q96R09 309 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 OR5M11Q96RB7 305 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MED18Q9BUE0 208 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MFRPQ9BY79 579 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 NDUFB11Q9NX14 153 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MRPL39Q9NYK5 338 aaKnown RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 IER3IP1Q9Y5U9 82 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 DNAJC13O75165 2243 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 A0A0J9YW62 118 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 C1QBP02746 253 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 STARP49675 285 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 GZMKP49863 264 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 CLDN20P56880 219 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ERVK-25P63136 954 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 MLLT11Q13015 90 aaPredicted RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 OCLNQ16625 522 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ALG10Q5BKT4 473 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 LCN1P1Q5VSP4 162 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 METAP1DQ6UB28 335 aaPredicted RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 NHLRC1Q6VVB1 395 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 FAM109AQ8N4B1 249 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 PROKR2Q8NFJ6 384 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ENKURQ8TC29 256 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 SLC25A46Q96AG3 418 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 LRR1Q96L50 414 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 DDOQ99489 341 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 DHRS9Q9BPW9 319 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 KATNB1Q9BVA0 655 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 HCAR1Q9BXC0 346 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 EXOSC4Q9NPD3 245 aaKnown RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 HINT3Q9NQE9 182 aaKnown RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 CMC2Q9NRP2 79 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 ING3Q9NXR8 418 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 DNAJC27Q9NZQ0 273 aa13.16□□□□□ -0.3
CXCL12-201ENST00000343575 LSM2Q9Y333 95 aaKnown RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 RPL36Q9Y3U8 105 aaKnown RBP13.16□□□□□ -0.3
CXCL12-201ENST00000343575 IMPA2O14732 288 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 ARPC3O15145 178 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 RRP8O43159 456 aaKnown RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 WISP2O76076 250 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 CD14P08571 375 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 HLA-DOBP13765 273 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 HIST1H1CP16403 213 aaKnown RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 FKBP2P26885 142 aaKnown RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 DIO1P49895 249 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 PMP22Q01453 160 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 SPHARQ15513 63 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 BAK1Q16611 211 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 DDI2Q5TDH0 399 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 AADACL4Q5VUY2 407 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 FAM131AQ6UXB0 335 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 TMPPEQ6ZT21 453 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 GGNQ86UU5 652 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 KDM8Q8N371 416 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 TMEM178AQ8NBL3 297 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 BBS1Q8NFJ9 593 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 PTP4A1Q93096 173 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 MIB2Q96AX9 1013 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 ERMAPQ96PL5 475 aaPredicted RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 BARHL1Q9BZE3 327 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 RANGRFQ9HD47 186 aaPredicted RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 SLC6A5Q9Y345 797 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 HDGFL3Q9Y3E1 203 aa13.15□□□□□ -0.3
CXCL12-201ENST00000343575 SPIN1Q9Y657 262 aaPredicted RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 SPENQ96T58 3664 aaKnown RBP13.15□□□□□ -0.3
CXCL12-201ENST00000343575 FAM183AA6NL82 134 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 RAMP1O60894 148 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 ZNF780AO75290 641 aaPredicted RBP13.14□□□□□ -0.31
CXCL12-201ENST00000343575 AKR7A3O95154 331 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 HLA-DQB1P01920 261 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 HIST1H2ABP04908 130 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 HMGN1P05114 100 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 ADRA2AP08913 450 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 RPL4P36578 427 aaKnown RBP13.14□□□□□ -0.31
CXCL12-201ENST00000343575 CRYBB2P43320 205 aa13.14□□□□□ -0.31
CXCL12-201ENST00000343575 OR3A3P47888 321 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms