RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NDUFAF7Q7L592 441 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 JAZF1Q86VZ6 243 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 OR1E3Q8WZA6 343 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 TM4SF19Q96DZ7 209 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 FOXN4Q96NZ1 517 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 LMF1Q96S06 567 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 PTDSS2Q9BVG9 487 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 NKX2-4Q9H2Z4 354 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 RFPL4AA6NLU0 287 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 RFPL4AL1F8VTS6 287 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 PRRT3Q5FWE3 981 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 SLC35D3Q5M8T2 416 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 PDSS1Q5T2R2 415 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 SHEQ5VZ18 495 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 SFTPA2Q8IWL1 248 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 OR6N2Q8NGY6 317 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 NKX6-2Q9C056 277 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-202ENST00000341753 MYEF2Q9P2K5 600 aaKnown RBP20.31■□□□□ 0.84
TRIM28-202ENST00000341753 HEATR5AQ86XA9 2040 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 OR10H2O60403 315 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 TACSTD2P09758 323 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 MNDAP41218 407 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 STEAP1BQ6NZ63 245 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 ANKRD16Q6P6B7 361 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 BEST3Q8N1M1 668 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 TMEM185AQ8NFB2 350 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 WNT2BQ93097 391 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 SEC22AQ96IW7 307 aa20.31■□□□□ 0.84
TRIM28-202ENST00000341753 ZMAT3Q9HA38 289 aaKnown RBP20.31■□□□□ 0.84
TRIM28-202ENST00000341753 PRSS38A1L453 326 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 OR2W5A6NFC9 320 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 H0YGG7 62 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 CYR61O00622 381 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 PLRG1O43660 514 aaKnown RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 SNAPC5O75971 98 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 TPPPO94811 219 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 NKX2-2O95096 273 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 CSN2P05814 226 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 ITGA5P08648 1049 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 CSRP1P21291 193 aaKnown RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 MAPK3P27361 379 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 ARF3P61204 181 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 STEAP2Q8NFT2 490 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 ADAT1Q9BUB4 502 aaKnown RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 MRI1Q9BV20 369 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 SLC25A32Q9H2D1 315 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 WDR76Q9H967 626 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 RASL12Q9NYN1 266 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 LRIT1Q9P2V4 623 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 CPNE7Q9UBL6 633 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 GTF2A1LQ9UNN4 478 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 SLC6A5Q9Y345 797 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 BRWD1Q9NSI6 2320 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 TRBV5-5A0A0J9YX44 114 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 ZNF254O75437 659 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 AK1P00568 194 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 OR4E1P0C645 316 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 DLX2Q07687 328 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 FIGLAQ6QHK4 219 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 ABHD13Q7L211 337 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 DPY19L4Q7Z388 723 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 MCATQ8IVS2 390 aaKnown RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 C15orf40Q8WUR7 153 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 SPACA7Q96KW9 195 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 ATG5Q9H1Y0 275 aa20.3■□□□□ 0.84
TRIM28-202ENST00000341753 BARX1Q9HBU1 254 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-202ENST00000341753 KCNAB3O43448 404 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 ABHD16AO95870 558 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 PRSS3P35030 304 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 SLC6A19Q695T7 634 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 SLC16A9Q7RTY1 509 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 C12orf45Q8N5I9 185 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-202ENST00000341753 OR1J2Q8NGS2 313 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 OR2G2Q8NGZ5 317 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 FLVCR1-AS1Q8TAF5 88 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 PPP1R14AQ96A00 147 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 LRFN5Q96NI6 719 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 MOGAT1Q96PD6 335 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 TINAGL1Q9GZM7 467 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-202ENST00000341753 LAMP5Q9UJQ1 280 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 PRELID3BQ9Y3B1 194 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 OR10H1Q9Y4A9 318 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 MPDZO75970 2070 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 A0A1B0GTQ1 180 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 A0A1W2PQF6 199 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 OR4C45A6NMZ5 311 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 TAF13Q15543 124 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 ARHGAP40Q5TG30 622 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 PRSS35Q8N3Z0 413 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 GALNT16Q8N428 558 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 OR4C3Q8NH37 302 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 TSEN15Q8WW01 171 aaKnown RBP20.29■□□□□ 0.84
TRIM28-202ENST00000341753 AMELYQ99218 206 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 ZNF471Q9BX82 626 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-202ENST00000341753 LAMA1P25391 3075 aa20.29■□□□□ 0.84
TRIM28-202ENST00000341753 ARHGEF17Q96PE2 2063 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-202ENST00000341753 A0A087WUJ7 227 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 GPR31O00270 319 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 ARPC3O15145 178 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 EIF4E2O60573 245 aaKnown RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms