RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CCR6P51684 374 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 HCCSP53701 268 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 MRPS10P82664 201 aaKnown RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.64□□□□□ -0.55
SDC3-201ENST00000336798 PGAP1Q75T13 922 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 HRH3Q9Y5N1 445 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 MYH3P11055 1940 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 ZC3H12DA2A288 527 aaKnown RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 OR5H15A6NDH6 313 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 OR5H14A6NHG9 310 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 OR5H1A6NKK0 313 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 IMPA1P29218 277 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 DLX5P56178 289 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 FLI1Q01543 452 aaPredicted RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 MLLT11Q13015 90 aaPredicted RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 WFDC8Q8IUA0 241 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 HSD17B11Q8NBQ5 300 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 SLC22A12Q96S37 553 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 NMES1Q9C002 83 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 ATP13A2Q9NQ11 1180 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 PTTG3PQ9NZH4 202 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 PADI1Q9ULC6 663 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 MRPS2Q9Y399 296 aaKnown RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 KCNK5O95279 499 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 IL3RAP26951 378 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 MEP1BQ16820 701 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 LRRC26Q2I0M4 334 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 ANKRD16Q6P6B7 361 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 KLHDC9Q8NEP7 349 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 RTP4Q96DX8 246 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 TVP23CQ96ET8 276 aa11.64□□□□□ -0.55
SDC3-201ENST00000336798 ZNF582Q96NG8 517 aaPredicted RBP11.64□□□□□ -0.55
SDC3-201ENST00000336798 NEURL4Q96JN8 1562 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 SIX6O95475 246 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 FUCA1P04066 466 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 GUSBP08236 651 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 OR13C7P0DN81 318 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 TRHRP34981 398 aaPredicted RBP11.63□□□□□ -0.55
SDC3-201ENST00000336798 ADRA1AP35348 466 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 ZNF93P35789 620 aaPredicted RBP11.63□□□□□ -0.55
SDC3-201ENST00000336798 MNX1P50219 401 aaPredicted RBP11.63□□□□□ -0.55
SDC3-201ENST00000336798 TSPAN31Q12999 210 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 Q6ZNX1 250 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CREB3L2Q70SY1 520 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 COA3Q9Y2R0 106 aaPredicted RBP11.63□□□□□ -0.55
SDC3-201ENST00000336798 A0A096LPE4 126 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 A0A1W2PPZ6 126 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 H0Y8X5 98 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CCSO14618 274 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 ADAM23O75077 832 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 GPLD1P80108 840 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 OR8G1Q15617 311 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 PRTGQ2VWP7 1150 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 GLYATL3Q5SZD4 288 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 PRSS45Q7RTY3 260 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 TIPARPQ7Z3E1 657 aaKnown RBP11.63□□□□□ -0.55
SDC3-201ENST00000336798 OR1E3Q8WZA6 343 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 NIPAL2Q9H841 368 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 INPP5EQ9NRR6 644 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 NFAT5O94916 1531 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 IFT172Q9UG01 1749 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 IGHV3-15A0A0B4J1V0 119 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CYTIPO60759 359 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 GABRB3P28472 473 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 FCER1GP30273 86 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 TLE4Q04727 773 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CRMP1Q14194 572 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 PGBD5Q8N414 524 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 SLC30A7Q8NEW0 376 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 OR51A4Q8NGJ6 313 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 OR51A2Q8NGJ7 313 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 IFI44Q8TCB0 444 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 HAVCR2Q8TDQ0 301 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CXorf36Q9H7Y0 433 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 PRELID3BQ9Y3B1 194 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 SEC14L6B5MCN3 397 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 LGI1O95970 557 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CTRB1P17538 263 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 BCL6P41182 706 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 HBG1P69891 147 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 HBG2P69892 147 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CCSMST1Q4G0I0 132 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 NHSL2Q5HYW2 709 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 FAM26DQ5JW98 314 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 LDLRAD1Q5T700 205 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 OTPQ5XKR4 325 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 CTRB2Q6GPI1 263 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 GLIPR1L1Q6UWM5 242 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 MBOAT2Q6ZWT7 520 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 OR1S2Q8NGQ3 325 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 PHOSPHO2Q8TCD6 241 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 DHRS9Q9BPW9 319 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 NRIP3Q9NQ35 241 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 MYOM1P52179 1685 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 A0A1B0GWA3 101 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 ARHGAP33O14559 1287 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 IGHEP01854 428 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 SBK2P0C263 348 aa11.63□□□□□ -0.55
SDC3-201ENST00000336798 RBMS2Q15434 407 aaKnown RBP11.63□□□□□ -0.55
SDC3-201ENST00000336798 GDPGP1Q6ZNW5 385 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms