RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FBXL4Q9UKA2 621 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 WDR87Q6ZQQ6 2873 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 J3KTA2 159 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ICOSLGO75144 302 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 PTGER4P35408 488 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 RAB11BQ15907 218 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 PLEKHN1Q494U1 663 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 TP53I3Q53FA7 332 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 TMEM69Q5SWH9 247 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 HEPHL1Q6MZM0 1159 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 GLB1L2Q8IW92 636 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ENTHD1Q8IYW4 607 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 SPSB2Q99619 263 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MICU1Q9BPX6 476 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 EGLN3Q9H6Z9 239 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 FGF20Q9NP95 211 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 V9GY05 133 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 TDRD15B5MCY1 1934 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CCNKO75909 580 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CRYAAP02489 173 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ACHEP22303 614 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 NCS1P62166 190 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CHAF1BQ13112 559 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 EIF2B1Q14232 305 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 PRAMEF17Q5VTA0 474 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 VASNQ6EMK4 673 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 Q6ZPB1 254 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 OLIG3Q7RTU3 272 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 OR4F15Q8NGB8 312 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ANKRD9Q96BM1 317 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ZG16BQ96DA0 208 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF582Q96NG8 517 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 SF3B5Q9BWJ5 86 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 SCG5P05408 212 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 SPI1P17947 270 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 MAP2K4P45985 399 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CLDN17P56750 224 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CBX3Q13185 183 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF74Q16587 644 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ACSM5Q6NUN0 579 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ANKRD37Q7Z713 158 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF584Q8IVC4 421 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CNEP1R1Q8N9A8 125 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 SPRYD4Q8WW59 207 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 AKAP1Q92667 903 aaKnown RBP eCLIP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 GHSRQ92847 366 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 NRIP3Q9NQ35 241 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 DNAJB12Q9NXW2 375 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 MRPL39Q9NYK5 338 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ICAM5Q9UMF0 924 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 A4GNTQ9UNA3 340 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 GRIP1Q9Y3R0 1128 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 G3V3Y1 287 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 NRG2O14511 850 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 GYPBP06028 91 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ANXA3P12429 323 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CPT2P23786 658 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CCL11P51671 97 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 SRYQ05066 204 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 AKIRIN2Q53H80 203 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 IGFN1Q86VF2 1251 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 TMEM99Q8N816 258 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 IL17RDQ8NFM7 739 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CLCC1Q96S66 551 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 OR2M5A3KFT3 312 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 DIRAS3O95661 229 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 LAP3P28838 519 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 SF3A2Q15428 464 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 LRRC28Q86X40 367 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 PHC2Q8IXK0 858 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 RFT1Q96AA3 541 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 RAB39BQ96DA2 213 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 PDCD10Q9BUL8 212 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 OR11A1Q9GZK7 315 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 NUFIP1Q9UHK0 495 aaKnown RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CLEC4AQ9UMR7 237 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 DOCK7Q96N67 2140 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 LNP1A1A4G5 178 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 TPPPO94811 219 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 PDGFBP01127 241 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CEACAM1P13688 526 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 IFNGR1P15260 489 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 ATF4P18848 351 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 GALP22466 123 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 TNFSF4P23510 183 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 MTNR1BP49286 362 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CCR9P51686 369 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 UBE2UQ5VVX9 321 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 NIPAL3Q6P499 406 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 B3GNT8Q7Z7M8 397 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 CREB3L1Q96BA8 519 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 TMEFF2Q9UIK5 374 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-201ENST00000335508 TIMM10BQ9Y5J6 103 aa6.24□□□□□ -1.41
SF3B1-201ENST00000335508 PRSS37A4D1T9 235 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ANKRD30BLA7E2S9 258 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 DISC1C4P0D8 188 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SGCEO43556 437 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PTTG1O95997 202 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CT45A8P0DMV1 189 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms