RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PPP2CBP62714 309 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 PPP2CAP67775 309 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 DEFB133Q30KQ1 61 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SLC22A6Q4U2R8 563 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 TCEAL6Q6IPX3 200 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SHISA6Q6ZSJ9 500 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 MCEMP1Q8IX19 187 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 BCORP1Q8N888 145 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 OR13C9Q8NGT0 318 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SERGEFQ9UGK8 458 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 HIF3AQ9Y2N7 669 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 RNF215Q9Y6U7 377 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 TMED7-TICAM2A0A0A6YYA0 188 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 FADS1O60427 444 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 RBMXL2O75526 392 aaKnown RBP13.47□□□□□ -0.25
TCOF1-201ENST00000323668 P2RX1P51575 399 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 LINC00303Q3SY05 128 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 PHF19Q5T6S3 580 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SVBPQ8N300 66 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 C16orf52Q8NHV5 167 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 NPRL2Q8WTW4 380 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 OR1F2PQ96R84 312 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SELENOIQ9C0D9 397 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 EIF5A2Q9GZV4 153 aaKnown RBP13.47□□□□□ -0.25
TCOF1-201ENST00000323668 TMED7Q9Y3B3 224 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 BRCA1P38398 1863 aaKnown RBP13.47□□□□□ -0.25
TCOF1-201ENST00000323668 PSME4Q14997 1843 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF236Q9UL36 1845 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 TMEM225BP0DP42 221 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 ST6GAL1P15907 406 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 GNMTQ14749 295 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 GSG1Q2KHT4 349 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 EMC4Q5J8M3 183 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 EEF1A1P5Q5VTE0 462 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 TMEM91Q6ZNR0 172 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 VN1R4Q7Z5H5 301 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 YIPF5Q969M3 257 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 CGGBP1Q9UFW8 167 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-201ENST00000323668 POMT2Q9UKY4 750 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 DOK2O60496 412 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 ZNF217O75362 1048 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 MYOGP15173 224 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 HOXB9P17482 250 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-201ENST00000323668 IL10RAQ13651 578 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SGCBQ16585 318 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 ADGRE4PQ86SQ3 457 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 OR2AK2Q8NG84 335 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 SLC22A8Q8TCC7 542 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 FBXO34Q9NWN3 711 aa13.47□□□□□ -0.25
TCOF1-201ENST00000323668 LPLP06858 475 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 LUMP51884 338 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-201ENST00000323668 UBE2MP61081 183 aaKnown RBP13.46□□□□□ -0.25
TCOF1-201ENST00000323668 DBPQ10586 325 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-201ENST00000323668 AANATQ16613 207 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 PRSS53Q2L4Q9 553 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 ETFBKMTQ8IXQ9 262 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 OR2G2Q8NGZ5 317 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 RLN3Q8WXF3 142 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 SIGLEC11Q96RL6 698 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 NKX2-4Q9H2Z4 354 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 FITM1A5D6W6 292 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 PLRG1O43660 514 aaKnown RBP13.46□□□□□ -0.25
TCOF1-201ENST00000323668 NKX2-2O95096 273 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 RPL18Q07020 188 aaKnown RBP13.46□□□□□ -0.25
TCOF1-201ENST00000323668 CLPPQ16740 277 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-201ENST00000323668 PARM1Q6UWI2 310 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 SLC6A18Q96N87 628 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 DLL4Q9NR61 685 aa13.46□□□□□ -0.25
TCOF1-201ENST00000323668 A0A1W2PPV9 198 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 RFXAPO00287 272 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 LILRB5O75023 590 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 RAD51DO75771 328 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 ZNF14P17017 642 aaPredicted RBP13.46□□□□□ -0.26
TCOF1-201ENST00000323668 DOC2BQ14184 412 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 FGL2Q14314 439 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 C5orf46Q6UWT4 87 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 TP53I13Q8NBR0 393 aaPredicted RBP13.46□□□□□ -0.26
TCOF1-201ENST00000323668 PTP4A1Q93096 173 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 AIFM2Q9BRQ8 373 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 POFUT1Q9H488 388 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 TUBAL3A6NHL2 446 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 A8MVM7 634 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 CTSVO60911 334 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 MTRF1O75570 445 aaKnown RBP13.46□□□□□ -0.26
TCOF1-201ENST00000323668 CTHP32929 405 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 SFTPDP35247 375 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 DRD3P35462 400 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 MELKQ14680 651 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 FAM71CQ8NEG0 241 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 OR4N2Q8NGD1 307 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 OR4K15Q8NH41 348 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 NRSN2Q9GZP1 204 aa13.46□□□□□ -0.26
TCOF1-201ENST00000323668 GGT3PA6NGU5 568 aa13.45□□□□□ -0.26
TCOF1-201ENST00000323668 AGPAT2O15120 278 aa13.45□□□□□ -0.26
TCOF1-201ENST00000323668 MT-ATP6P00846 226 aa13.45□□□□□ -0.26
TCOF1-201ENST00000323668 DMKNQ6E0U4 476 aaPredicted RBP13.45□□□□□ -0.26
TCOF1-201ENST00000323668 ZNF425Q6IV72 752 aa13.45□□□□□ -0.26
TCOF1-201ENST00000323668 LPCAT3Q6P1A2 487 aa13.45□□□□□ -0.26
TCOF1-201ENST00000323668 LIX1LQ8IVB5 337 aa13.45□□□□□ -0.26
TCOF1-201ENST00000323668 SGPP2Q8IWX5 399 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms