RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ZNF684Q5T5D7 378 aa15.99■□□□□ 0.15
SYNPO-201ENST00000307662 OR5M10Q6IEU7 315 aa15.99■□□□□ 0.15
SYNPO-201ENST00000307662 MFSD12Q6NUT3 480 aa15.99■□□□□ 0.15
SYNPO-201ENST00000307662 FJX1Q86VR8 437 aa15.99■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF768Q9H5H4 540 aaKnown RBP15.99■□□□□ 0.15
SYNPO-201ENST00000307662 DNAJB11Q9UBS4 358 aa15.99■□□□□ 0.15
SYNPO-201ENST00000307662 MCRIP1C9JLW8 97 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 PRAMEF26H0Y7S4 382 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 DOK2O60496 412 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 RGS11O94810 467 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 GCH1P30793 250 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 ERV3-1Q14264 604 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 OLIG3Q7RTU3 272 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 TAS1R1Q7RTX1 841 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 LGI3Q8N145 548 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 PFN4Q8NHR9 129 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 OR1E3Q8WZA6 343 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 RASD2Q96D21 266 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 HSFX1Q9UBD0 423 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 ACSM5Q6NUN0 579 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 RHOUQ7L0Q8 258 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 MMP21Q8N119 569 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 OR9K2Q8NGE7 335 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 OR5L1Q8NGL2 311 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 SLC6A18Q96N87 628 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 TXN2Q99757 166 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 MED18Q9BUE0 208 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 C8orf33Q9H7E9 229 aaPredicted RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 HRASLSQ9HDD0 168 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 EIF4EP06730 217 aaKnown RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 IGFBP1P08833 259 aaPredicted RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 AADACP22760 399 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 CST5P28325 142 aaPredicted RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 PSMB3P49720 205 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 UBE2IP63279 158 aaKnown RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 HTRA4P83105 476 aaPredicted RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 PLGLAQ15195 96 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 CTF1Q16619 201 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 YOD1Q5VVQ6 348 aaPredicted RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 PRSS35Q8N3Z0 413 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 OR2G3Q8NGZ4 309 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 ENKD1Q9H0I2 346 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 ACOXLQ9NUZ1 547 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 HS3ST2Q9Y278 367 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 MED16Q9Y2X0 877 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 A0A1B0GUH1 482 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 TIMP1P01033 207 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 HPNP05981 417 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 MRPL19P49406 292 aaKnown RBP15.98■□□□□ 0.15
SYNPO-201ENST00000307662 BDH1Q02338 343 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 TESK1Q15569 626 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 TMEM179BQ7Z7N9 219 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 NKAIN4Q8IVV8 208 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 SLC46A2Q9BY10 475 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 NECAP2Q9NVZ3 263 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 HCFC1R1Q9NWW0 138 aa15.98■□□□□ 0.15
SYNPO-201ENST00000307662 DFFBO76075 338 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 NPPBP16860 134 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 CD53P19397 219 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 ITGB8P26012 769 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 FAHD1Q6P587 224 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 LRRC18Q8N456 261 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 NANPQ8TBE9 248 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 CLSTN3Q9BQT9 956 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 GAREM1Q9H706 876 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 TRPM3Q9HCF6 1732 aaPredicted RBP15.97■□□□□ 0.15
SYNPO-201ENST00000307662 CHRM2P08172 466 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 FABP5Q01469 135 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF239Q16600 458 aaKnown RBP15.97■□□□□ 0.15
SYNPO-201ENST00000307662 ZBTB37Q5TC79 503 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 UCN3Q969E3 161 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 SRPK3Q9UPE1 567 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 MYO18AQ92614 2054 aaKnown RBP15.97■□□□□ 0.15
SYNPO-201ENST00000307662 POU3F3P20264 500 aaPredicted RBP15.97■□□□□ 0.15
SYNPO-201ENST00000307662 TRHRP34981 398 aaPredicted RBP15.97■□□□□ 0.15
SYNPO-201ENST00000307662 P2RX3P56373 397 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 FAM199XQ6PEV8 388 aaPredicted RBP15.97■□□□□ 0.15
SYNPO-201ENST00000307662 PDXPQ96GD0 296 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 MAP6Q96JE9 813 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 PIAS3Q9Y6X2 628 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 SNRPGP15A8MWD9 76 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 UMAD1C9J7I0 102 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF217O75362 1048 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 CLDN1O95832 211 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 HNF4GQ14541 408 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 LINC00346Q8IVM7 164 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 SFT2D1Q8WV19 159 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 TAAR2Q9P1P5 351 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 OR14J1Q9UGF5 321 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 NDRG3Q9UGV2 375 aa15.97■□□□□ 0.15
SYNPO-201ENST00000307662 IGLV3-10A0A075B6K4 115 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZFP92A6NM28 416 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 HTR5AP47898 357 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 TEX261Q6UWH6 196 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 GLIPR1L1Q6UWM5 242 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 SHISA6Q6ZSJ9 500 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 NAA40Q86UY6 237 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 TMEFF1Q8IYR6 380 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 OR1M1Q8NGA1 313 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 OR51A4Q8NGJ6 313 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms