RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 UBALD1Q8TB05 177 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 INTS14Q96SY0 518 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ZDHHC8Q9ULC8 765 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 NSG2Q9Y328 171 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 B4DGG1 531 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TISP43B9A030 160 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 M0R143 59 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC31A1O15431 190 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ARPC5O15511 151 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CST4P01036 141 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR5AC1P0C628 307 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM225BP0DP42 221 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ABOP16442 354 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CBLP22681 906 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ABCD3P28288 659 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CAV2P51636 162 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 FOXO1Q12778 655 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 COMMD6Q7Z4G1 85 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CLEC1AQ8NC01 280 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 KTI12Q96EK9 354 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TBX5Q99593 518 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 HCAR1Q9BXC0 346 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ZBTB20Q9HC78 741 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 HRASLSQ9HDD0 168 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 P4HTMQ9NXG6 502 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 DNAJC27Q9NZQ0 273 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 HS3ST2Q9Y278 367 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 A0A1B0GV50 99 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 VSTM2BA6NLU5 285 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 A8MU76 341 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TXNL1O43396 289 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ASGR2P07307 311 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 KLRK1P26718 216 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GDNFP39905 211 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 BIDP55957 195 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ZP2Q05996 745 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SELENBP1Q13228 472 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ENDOGQ14249 297 aaKnown RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF836Q6ZNA1 936 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 TCEAL8Q8IYN2 117 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 LGI3Q8N145 548 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR5K2Q8NHB8 316 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR14L1PQ8NHC6 308 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 IFI44Q8TCB0 444 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ST7LQ8TDW4 575 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR2S2Q9NQN1 319 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 PISDQ9UG56 409 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 LTBP4Q8N2S1 1624 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 PMS2P1A4D2B8 440 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CTDSP2O14595 271 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 HPGDSO60760 199 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 ADAMTS4O75173 837 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GLCEO94923 617 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 AMY2AP04746 511 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 GABRB1P18505 474 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 AK4P27144 223 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 AOAHP28039 575 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SFTPDP35247 375 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 EIF1P41567 113 aaKnown RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC6A12P48065 614 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SUCLG1P53597 346 aaKnown RBP4.86□□□□□ -1.63
SCN1A-201ENST00000303395 Q3ZCU0 254 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 PRAMEF18Q5VWM3 479 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 BPIFCQ8NFQ6 507 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR2A12Q8NGT7 310 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 MICU1Q9BPX6 476 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 DMRT3Q9NQL9 472 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 CMC2Q9NRP2 79 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 SLC35D1Q9NTN3 355 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 OR5AC2Q9NZP5 309 aa4.86□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DS5A0A0G2JLQ3 304 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 A0A0G2JNG1 304 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 C4orf47A7E2U8 309 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KDM4EB2RXH2 506 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LINC01387J3KSC0 135 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DS3K7RE56 304 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FABP7O15540 132 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 NIPSNAP2O75323 286 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 C8AP07357 584 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CTSLP07711 333 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 EPHA1P21709 976 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ADH7P40394 386 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ARG2P78540 354 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 IL13RA1P78552 427 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 DLX2Q07687 328 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SLC17A1Q14916 467 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DS5Q14953 304 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SLC35G1Q2M3R5 365 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LEXMQ3ZCV2 418 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 TMPRSS12Q86WS5 348 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FRMD1Q8N878 549 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FAM110BQ8TC76 370 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 INTS12Q96CB8 462 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 THOC3Q96J01 351 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 KCMF1Q9P0J7 381 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PURGQ9UJV8 347 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF223Q9UK11 482 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.85□□□□□ -1.638e-7■■■■□ 21.2
SCN1A-201ENST00000303395 TRAV9-1A0A075B6T8 112 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RPS10-NUDT3A0A1W2PQS6 291 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms