RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CTLA4P16410 223 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 ERP29P30040 261 aaKnown RBP18.1■□□□□ 0.49
VPS53-201ENST00000291074 SNRPD2P62316 118 aaKnown RBP18.1■□□□□ 0.49
VPS53-201ENST00000291074 PLA2G7Q13093 441 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 PWWP2BQ6NUJ5 590 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 TSSK4Q6SA08 328 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 BAIAP2L2Q6UXY1 529 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 LRRTM1Q86UE6 522 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 KMT5CQ86Y97 462 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 OR52I2Q8NH67 350 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 SCMH1Q96GD3 660 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 DUSP15Q9H1R2 295 aaPredicted RBP18.1■□□□□ 0.49
VPS53-201ENST00000291074 GHITMQ9H3K2 345 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 FSCN3Q9NQT6 498 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 NUBP2Q9Y5Y2 271 aa18.1■□□□□ 0.49
VPS53-201ENST00000291074 CPED1A4D0V7 1026 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 A8MVM7 634 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 WNT11O96014 354 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 MT-ATP6P00846 226 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 HLA-DOBP13765 273 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 EGR3Q06889 387 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 TMEM255AQ5JRV8 349 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 WDR38Q5JTN6 314 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 GRINAQ7Z429 371 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 TMPRSS12Q86WS5 348 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 APCDD1LQ8NCL9 501 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 ZFAND1Q8TCF1 268 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 PPP1R14AQ96A00 147 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 TMEM106AQ96A25 262 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 PHF21AQ96BD5 680 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 MED28Q9H204 178 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 BEX1Q9HBH7 125 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 MRPL22Q9NWU5 206 aaKnown RBP18.09■□□□□ 0.49
VPS53-201ENST00000291074 RCE1Q9Y256 329 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 KIF26BQ2KJY2 2108 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 C7orf66A4D0T2 115 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 AKR7A2O43488 359 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 SPARCP09486 303 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 SNTB2Q13425 540 aaKnown RBP18.09■□□□□ 0.49
VPS53-201ENST00000291074 WDR45BQ5MNZ6 344 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 GUSBP11Q6P575 273 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 BEST4Q8NFU0 473 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 OR11H7Q8NGC8 314 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 SLITRK2Q9H156 845 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 ELOVL3Q9HB03 270 aa18.09■□□□□ 0.49
VPS53-201ENST00000291074 CTDSPLO15194 276 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 OR6A2O95222 327 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 TMIGD3P0DMS9 266 aaPredicted RBP18.08■□□□□ 0.49
VPS53-201ENST00000291074 CXCL12P48061 93 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 RHBDD2Q6NTF9 364 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 MS4A3Q96HJ5 214 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 C4orf45Q96LM5 186 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 OR6C1Q96RD1 312 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 GTF2A1LQ9UNN4 478 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 HRH3Q9Y5N1 445 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 TMEM14AQ9Y6G1 99 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 WDFY3Q8IZQ1 3526 aa18.08■□□□□ 0.49
VPS53-201ENST00000291074 PLPP3O14495 311 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 GMDSO60547 372 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 ZNF254O75437 659 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 DXOO77932 396 aaKnown RBP18.08■□□□□ 0.48
VPS53-201ENST00000291074 MAPK3P27361 379 aaPredicted RBP18.08■□□□□ 0.48
VPS53-201ENST00000291074 SFRP4Q6FHJ7 346 aaPredicted RBP18.08■□□□□ 0.48
VPS53-201ENST00000291074 MDGA2Q7Z553 956 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 ANKRD37Q7Z713 158 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 LIX1LQ8IVB5 337 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 COMMD4Q9H0A8 199 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 TXNIPQ9H3M7 391 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 NIPAL2Q9H841 368 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 KLK11Q9UBX7 282 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 FOXJ3Q9UPW0 622 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 FKBP7Q9Y680 259 aa18.08■□□□□ 0.48
VPS53-201ENST00000291074 IGLV1-36A0A0B4J1U3 117 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 AHSA1O95433 338 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 HOXD11P31277 338 aaPredicted RBP18.07■□□□□ 0.48
VPS53-201ENST00000291074 PTH2RP49190 550 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 CLPPQ16740 277 aaPredicted RBP18.07■□□□□ 0.48
VPS53-201ENST00000291074 BTBD16Q32M84 506 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 SMUG1Q53HV7 270 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 YOD1Q5VVQ6 348 aaPredicted RBP18.07■□□□□ 0.48
VPS53-201ENST00000291074 HLA-CQ95604 372 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 CMTM3Q96MX0 182 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 NKX3-1Q99801 234 aaPredicted RBP18.07■□□□□ 0.48
VPS53-201ENST00000291074 NKIRAS2Q9NYR9 191 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 SLC22A13Q9Y226 551 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 MPZL1O95297 269 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 CDK2P24941 298 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 CAMK2BQ13554 666 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 LILRB4Q8NHJ6 448 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 ARL5BQ96KC2 179 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 OR8B4Q96RC9 309 aa18.07■□□□□ 0.48
VPS53-201ENST00000291074 TRBV5-7A0A0A0MS05 114 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 TMEM212A6NML5 194 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 ANXA2P2A6NMY6 339 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 PNPP00491 289 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 ANXA2P07355 339 aaKnown RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 HEXBP07686 556 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 ARRB1P49407 418 aaPredicted RBP18.06■□□□□ 0.48
VPS53-201ENST00000291074 NKAIN1Q4KMZ8 207 aa18.06■□□□□ 0.48
VPS53-201ENST00000291074 TMEM69Q5SWH9 247 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms