RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ZNF627Q7L945 461 aa15.03■□□□□ -0
VPS54-201ENST00000272322 SLC16A9Q7RTY1 509 aa15.03■□□□□ -0
VPS54-201ENST00000272322 KRT77Q7Z794 578 aa15.03■□□□□ -0
VPS54-201ENST00000272322 FAM46BQ96A09 425 aa15.03■□□□□ -0
VPS54-201ENST00000272322 LMX1BO60663 402 aa15.03■□□□□ -0
VPS54-201ENST00000272322 KRT33AO76009 404 aa15.03■□□□□ -0
VPS54-201ENST00000272322 EBPQ15125 230 aaKnown RBP15.03■□□□□ -0
VPS54-201ENST00000272322 OR7A5Q15622 319 aa15.03■□□□□ -0
VPS54-201ENST00000272322 UBE2NLQ5JXB2 153 aa15.03■□□□□ -0
VPS54-201ENST00000272322 PRSS35Q8N3Z0 413 aa15.03■□□□□ -0
VPS54-201ENST00000272322 C9orf62Q8N4C0 152 aa15.03■□□□□ -0
VPS54-201ENST00000272322 FTMTQ8N4E7 242 aa15.03■□□□□ -0
VPS54-201ENST00000272322 JAGN1Q8N5M9 183 aa15.03■□□□□ -0
VPS54-201ENST00000272322 MEIOBQ8N635 442 aa15.03■□□□□ -0
VPS54-201ENST00000272322 SLC38A9Q8NBW4 561 aa15.03■□□□□ -0
VPS54-201ENST00000272322 ZNF721Q8TF20 911 aa15.03■□□□□ -0
VPS54-201ENST00000272322 NMNAT2Q9BZQ4 307 aa15.03■□□□□ -0
VPS54-201ENST00000272322 NOX3Q9HBY0 568 aa15.03■□□□□ -0
VPS54-201ENST00000272322 POM121CA8CG34 1229 aa15.02■□□□□ -0
VPS54-201ENST00000272322 IL33O95760 270 aa15.02■□□□□ -0
VPS54-201ENST00000272322 ASAH2BP0C7U1 165 aa15.02■□□□□ -0
VPS54-201ENST00000272322 CD27P26842 260 aa15.02■□□□□ -0
VPS54-201ENST00000272322 GABRA4P48169 554 aa15.02■□□□□ -0
VPS54-201ENST00000272322 ART1P52961 327 aa15.02■□□□□ -0
VPS54-201ENST00000272322 HNRNPKP61978 463 aaKnown RBP eCLIP15.02■□□□□ -08e-8■□□□□ 8.4
VPS54-201ENST00000272322 SYT13Q7L8C5 426 aa15.02■□□□□ -0
VPS54-201ENST00000272322 OR11G2Q8NGC1 345 aa15.02■□□□□ -0
VPS54-201ENST00000272322 SMIM4Q8WVI0 70 aa15.02■□□□□ -0
VPS54-201ENST00000272322 SPACA5Q96QH8 159 aa15.02■□□□□ -0
VPS54-201ENST00000272322 GINS4Q9BRT9 223 aa15.02■□□□□ -0
VPS54-201ENST00000272322 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.02■□□□□ -0
VPS54-201ENST00000272322 COMMD4Q9H0A8 199 aa15.02■□□□□ -0
VPS54-201ENST00000272322 NUBP2Q9Y5Y2 271 aa15.02■□□□□ -0
VPS54-201ENST00000272322 METTL12A8MUP2 240 aa15.02■□□□□ -0
VPS54-201ENST00000272322 ALDOBP05062 364 aa15.02■□□□□ -0
VPS54-201ENST00000272322 CSF2RBP32927 897 aa15.02■□□□□ -0
VPS54-201ENST00000272322 P2RX1P51575 399 aa15.02■□□□□ -0
VPS54-201ENST00000272322 RPS4XP62701 263 aaKnown RBP15.02■□□□□ -0
VPS54-201ENST00000272322 C14orf28Q4W4Y0 310 aa15.02■□□□□ -0
VPS54-201ENST00000272322 TCTE1Q5JU00 501 aa15.02■□□□□ -0
VPS54-201ENST00000272322 CARD17Q5XLA6 110 aa15.02■□□□□ -0
VPS54-201ENST00000272322 ARSKQ6UWY0 536 aa15.02■□□□□ -0
VPS54-201ENST00000272322 SLC29A4Q7RTT9 530 aa15.02■□□□□ -0
VPS54-201ENST00000272322 GPAT4Q86UL3 456 aa15.02■□□□□ -0
VPS54-201ENST00000272322 OR51A2Q8NGJ7 313 aa15.02■□□□□ -0
VPS54-201ENST00000272322 OR2I1PQ8NGU4 316 aa15.02■□□□□ -0
VPS54-201ENST00000272322 OR56B4Q8NH76 319 aa15.02■□□□□ -0
VPS54-201ENST00000272322 RNF166Q96A37 237 aaPredicted RBP15.02■□□□□ -0
VPS54-201ENST00000272322 SCMH1Q96GD3 660 aa15.02■□□□□ -0
VPS54-201ENST00000272322 HYLS1Q96M11 299 aa15.02■□□□□ -0
VPS54-201ENST00000272322 C5orf34Q96MH7 638 aa15.02■□□□□ -0
VPS54-201ENST00000272322 AKIRIN1Q9H9L7 192 aaPredicted RBP15.02■□□□□ -0
VPS54-201ENST00000272322 ZFP64Q9NPA5 681 aa15.02■□□□□ -0
VPS54-201ENST00000272322 TMEM138Q9NPI0 162 aa15.02■□□□□ -0
VPS54-201ENST00000272322 PRDM9Q9NQV7 894 aa15.02■□□□□ -0
VPS54-201ENST00000272322 CA10Q9NS85 328 aa15.02■□□□□ -0
VPS54-201ENST00000272322 MGAT4CQ9UBM8 478 aa15.02■□□□□ -0
VPS54-201ENST00000272322 GALP22466 123 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 DPP4P27487 766 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 HSD11B2P80365 405 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 MFGE8Q08431 387 aaPredicted RBP15.02□□□□□ -0.01
VPS54-201ENST00000272322 KLF9Q13886 244 aaPredicted RBP15.02□□□□□ -0.01
VPS54-201ENST00000272322 NDUFAF7Q7L592 441 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 SLC46A1Q96NT5 459 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 KLHL9Q9P2J3 617 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 PCDHGA5Q9Y5G8 931 aa15.02□□□□□ -0.01
VPS54-201ENST00000272322 TMED7-TICAM2A0A0A6YYA0 188 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 LOC101059948A0A1B0GTJ6 334 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 TSPAN5P62079 268 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 C19orf57Q0VDD7 668 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 RIN1Q13671 783 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.01□□□□□ -0.01
VPS54-201ENST00000272322 C1QTNF12Q5T7M4 302 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 FAM198BQ6UWH4 519 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 OVCH1Q7RTY7 1134 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 TMED4Q7Z7H5 227 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 SUSD2Q9UGT4 822 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 TMED7Q9Y3B3 224 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 EMC9Q9Y3B6 208 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 RGS11O94810 467 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 SLC2A1P11166 492 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 ALOX5APP20292 161 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 PTH2RP49190 550 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 GNG2P59768 71 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 CBFBQ13951 182 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 CCDC157Q569K6 752 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 CHMP1BQ7LBR1 199 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 SIX5Q8N196 739 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 KLHL15Q96M94 604 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 B3GNT4Q9C0J1 378 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 ATG5Q9H1Y0 275 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 SLC2A4RGQ9NR83 387 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 FARSAQ9Y285 508 aaKnown RBP15.01□□□□□ -0.01
VPS54-201ENST00000272322 RALGAPA1Q6GYQ0 2036 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 IGHV1OR21-1A0A087WYE8 117 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 MASP2O00187 686 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 TIAF1O95411 115 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 ITGA5P08648 1049 aa15.01□□□□□ -0.01
VPS54-201ENST00000272322 PSMB1P20618 241 aaKnown RBP15.01□□□□□ -0.01
VPS54-201ENST00000272322 POU3F4P49335 361 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms