RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NAGSQ8N159 534 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 A0A0U1RQF3 1178 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 RRASP10301 218 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 OR1D4P47884 311 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 HERVK_113P61574 105 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 PHLDA2Q53GA4 152 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 M0R143 59 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 TYROBPO43914 113 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 NXPH3O95157 252 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 LGI1O95970 557 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 DTWD2Q8NBA8 298 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 GPR119Q8TDV5 335 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ASB13Q8WXK3 278 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 GABARAPL1Q9H0R8 117 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 PRAMEF26H0Y7S4 382 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 YKT6O15498 198 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ST8SIA3O43173 380 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 GATCO43716 136 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ICMTO60725 284 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 PDGFAP04085 211 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 LAMP1P11279 417 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 HIST1H3AP68431 136 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 TMUB2Q71RG4 321 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF583Q96ND8 569 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ADOQ96SZ5 270 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ATP5SQ99766 215 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 CHST11Q9NPF2 352 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 DMRT3Q9NQL9 472 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 BET1LQ9NYM9 111 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 Q9Y3F1 56 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 KIR2DS5A0A0G2JLQ3 304 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 A0A0G2JNG1 304 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 FAM183AA6NL82 134 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 KIR2DS3K7RE56 304 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 EIF1P41567 113 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 MFAP5Q13361 173 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 KIR2DS5Q14953 304 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 RPUSD3Q6P087 351 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 UBAC2Q8NBM4 344 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 BCL2L2Q92843 193 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 RTP4Q96DX8 246 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 RAB27BO00194 218 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 COCHO43405 550 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 TNFRSF1BP20333 461 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC25A32Q9H2D1 315 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 NDUFB7P17568 137 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 DCAF12Q5T6F0 453 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 TMEM182Q6ZP80 229 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 TMEM135Q86UB9 458 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 ARRDC3Q96B67 414 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 SMG9Q9H0W8 520 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF264O43296 627 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 COX7A2P2O60397 106 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 GPR32O75388 356 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 ARNTP27540 789 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 AHRP35869 848 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 DHRS7BQ6IAN0 325 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 PPP1R3BQ86XI6 285 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 CA14Q9ULX7 337 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 COX5AP20674 150 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 GNB2P62879 340 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 OR10P1Q8NGE3 313 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 CACNG4Q9UBN1 327 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 CDK2AP1O14519 115 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 DCTP40126 519 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 CNN1P51911 297 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 BCL7AQ4VC05 210 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 KHSRPQ92945 711 aaKnown RBP eCLIP12.91□□□□□ -0.346e-7■■■□□ 15.4
CCDC88A-201ENST00000263630 RNF225M0QZC1 329 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 EDN3P14138 238 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 CR2P20023 1033 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 SSR4P51571 173 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 P2RX3P56373 397 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 CLEC9AQ6UXN8 241 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF551Q7Z340 670 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 HES7Q9BYE0 225 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 GSTO2Q9H4Y5 243 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 SSSCA1O60232 199 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 HAGHQ16775 308 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 NCR3LG1Q68D85 454 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 PM20D1Q6GTS8 502 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 FDX2Q6P4F2 183 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 GPR32P1Q8NGA4 272 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 HSD17B8Q92506 261 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 SALL4Q9UJQ4 1053 aa12.91□□□□□ -0.34
CCDC88A-201ENST00000263630 SGK494L7N484 410 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 FKBP2P26885 142 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF534Q76KX8 674 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 DEFB132Q7Z7B7 95 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 RETREG3Q86VR2 466 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 MRGPRX2Q96LB1 330 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 ATG101Q9BSB4 218 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 A0A0B4J203 849 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 FABP7O15540 132 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 GYPBP06028 91 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 DRD1P21728 446 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 MSS51Q4VC12 460 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 TCTEX1D1Q8N7M0 179 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 OR52R1Q8NGF1 315 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 MBD5Q9P267 1494 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms