RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 IFNA8P32881 189 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 ARF1P84077 181 aaKnown RBP16.78■□□□□ 0.28
CLN3-260ENST00000637578 POU3F1Q03052 451 aaPredicted RBP16.78■□□□□ 0.28
CLN3-260ENST00000637578 ST3GAL3Q11203 375 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 PHYHD1Q5SRE7 291 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 C11orf71Q6IPW1 123 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 ZDHHC21Q8IVQ6 265 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 WDFY1Q8IWB7 410 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 GPR137CQ8N3F9 429 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 POP5Q969H6 163 aaKnown RBP16.78■□□□□ 0.28
CLN3-260ENST00000637578 FNDC11Q9BVV2 318 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 MAGIXQ9H6Y5 334 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 CRLF2Q9HC73 371 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 MEPEQ9NQ76 525 aaPredicted RBP16.78■□□□□ 0.28
CLN3-260ENST00000637578 MAN2C1Q9NTJ4 1040 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 ZNF229Q9UJW7 825 aa16.78■□□□□ 0.28
CLN3-260ENST00000637578 TCRBV3S1A0A5B6 114 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 DHRS12A0PJE2 317 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 SLC35F4A4IF30 521 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 TRIM64A6NGJ6 449 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 TRIM64BA6NI03 449 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 CH25HO95992 272 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 IGF2P01344 180 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 ASAH2BP0C7U1 165 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 CDKN1AP38936 164 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 MAGEA2P43356 314 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 IL1RL1Q01638 556 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 ETFDHQ16134 617 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 CEACAM16Q2WEN9 425 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 FAM98BQ52LJ0 330 aaKnown RBP16.77■□□□□ 0.28
CLN3-260ENST00000637578 AGAP6Q5VW22 663 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 ZNF544Q6NX49 715 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 TMEM255BQ8WV15 326 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 CANT1Q8WVQ1 401 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 SMR3AQ99954 134 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 EMC6Q9BV81 110 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 NMNAT1Q9HAN9 279 aaPredicted RBP16.77■□□□□ 0.28
CLN3-260ENST00000637578 MOV10Q9HCE1 1003 aaKnown RBP16.77■□□□□ 0.28
CLN3-260ENST00000637578 MED29Q9NX70 200 aa16.77■□□□□ 0.28
CLN3-260ENST00000637578 A0A096LPE4 126 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 IGHV1-18A0A0C4DH31 117 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 A0A1W2PPZ6 126 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 H7C1Q1 480 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 CIB2O75838 187 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 IGLV1-44P01699 117 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 RBM34P42696 430 aaKnown RBP16.77■□□□□ 0.27
CLN3-260ENST00000637578 UBE2NP61088 152 aaKnown RBP16.77■□□□□ 0.27
CLN3-260ENST00000637578 CHRNB3Q05901 458 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 ZNF627Q7L945 461 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 LRRC17Q8N6Y2 441 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 GTPBP3Q969Y2 492 aaKnown RBP16.77■□□□□ 0.27
CLN3-260ENST00000637578 SLC38A2Q96QD8 506 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 NANSQ9NR45 359 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 CBLN4Q9NTU7 201 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 POU2F3Q9UKI9 436 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 AURKCQ9UQB9 309 aa16.77■□□□□ 0.27
CLN3-260ENST00000637578 ZNF99A8MXY4 864 aaPredicted RBP16.76■□□□□ 0.27
CLN3-260ENST00000637578 KPNA4O00629 521 aaPredicted RBP16.76■□□□□ 0.27
CLN3-260ENST00000637578 IGKV3-15P01624 115 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 ADORA3P0DMS8 318 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 AHCYP23526 432 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 TRAM2Q15035 370 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 DNM1P46Q6ZS02 220 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 SLC46A3Q7Z3Q1 461 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 PIWIL3Q7Z3Z3 882 aaKnown RBP16.76■□□□□ 0.27
CLN3-260ENST00000637578 KATNB1Q9BVA0 655 aa16.76■□□□□ 0.27
CLN3-260ENST00000637578 M0R3G1 203 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 IGHV4-39P01824 125 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 H1F0P07305 194 aaKnown RBP16.75■□□□□ 0.27
CLN3-260ENST00000637578 RAP2AP10114 183 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 UMPSP11172 480 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 UGT2B15P54855 530 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 CCNIQ14094 377 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 CARD17Q5XLA6 110 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 CCDC36Q8IYA8 594 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 MUC15Q8N387 334 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 OR6X1Q8NH79 312 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 TMEM239Q8WW34 195 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 LIPHQ8WWY8 451 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 DHRS1Q96LJ7 313 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 ADAD1Q96M93 576 aaKnown RBP16.75■□□□□ 0.27
CLN3-260ENST00000637578 MOKQ9UQ07 419 aa16.75■□□□□ 0.27
CLN3-260ENST00000637578 HEATR1Q9H583 2144 aaKnown RBP16.75■□□□□ 0.27
CLN3-260ENST00000637578 A0A1W2PRQ8 180 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 ZNF726A6NNF4 738 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 FAM171A2A8MVW0 826 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 ATP6V1G2-DDX39BF2Z307 99 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 IFNGR1P15260 489 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 CBR1P16152 277 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 FABP6P51161 128 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 LSM11P83369 360 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLN3-260ENST00000637578 SPIBQ01892 262 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 CAMK2DQ13557 499 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 DGCR6Q14129 220 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 FBXL14Q8N1E6 418 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 PFN4Q8NHR9 129 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 RSRC1Q96IZ7 334 aaKnown RBP16.74■□□□□ 0.27
CLN3-260ENST00000637578 HS6ST2Q96MM7 605 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 ZNF347Q96SE7 839 aa16.74■□□□□ 0.27
CLN3-260ENST00000637578 CHID1Q9BWS9 393 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms