RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RAP1AP62834 184 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 ACSM1Q08AH1 577 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 TPBGQ13641 420 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 CRTC2Q53ET0 693 aaPredicted RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 GALNTL5Q7Z4T8 443 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 ZBTB46Q86UZ6 589 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 UEVLDQ8IX04 471 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 OR2T27Q8NH04 317 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 HAS2Q92819 552 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 TTTY12Q9BZ98 90 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 TTTY10Q9BZA0 68 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 RNF32Q9H0A6 362 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 COPS3Q9UNS2 423 aa15.09■□□□□ 0.01
CLN3-252ENST00000636907 KLF13Q9Y2Y9 288 aaPredicted RBP15.09■□□□□ 0.01
CLN3-252ENST00000636907 FREM3P0C091 2139 aa15.08■□□□□ 0
CLN3-252ENST00000636907 TVP23AA6NH52 213 aa15.08■□□□□ 0
CLN3-252ENST00000636907 H0YC42 278 aa15.08■□□□□ 0
CLN3-252ENST00000636907 TNFSF11O14788 317 aa15.08■□□□□ 0
CLN3-252ENST00000636907 AKAP8O43823 692 aaKnown RBP15.08■□□□□ 0
CLN3-252ENST00000636907 GPANK1O95872 356 aa15.08■□□□□ 0
CLN3-252ENST00000636907 CD46P15529 392 aa15.08■□□□□ 0
CLN3-252ENST00000636907 CTLA4P16410 223 aa15.08■□□□□ 0
CLN3-252ENST00000636907 BIDP55957 195 aa15.08■□□□□ 0
CLN3-252ENST00000636907 ARG2P78540 354 aa15.08■□□□□ 0
CLN3-252ENST00000636907 H3F3AP84243 136 aa15.08■□□□□ 0
CLN3-252ENST00000636907 FOXC1Q12948 553 aa15.08■□□□□ 0
CLN3-252ENST00000636907 FAM205BPQ63HN1 556 aa15.08■□□□□ 0
CLN3-252ENST00000636907 TMEM225Q6GV28 225 aa15.08■□□□□ 0
CLN3-252ENST00000636907 GPAT4Q86UL3 456 aa15.08■□□□□ 0
CLN3-252ENST00000636907 TIGD4Q8IY51 512 aa15.08■□□□□ 0
CLN3-252ENST00000636907 SYT14Q8NB59 555 aa15.08■□□□□ 0
CLN3-252ENST00000636907 FDCSPQ8NFU4 85 aa15.08■□□□□ 0
CLN3-252ENST00000636907 UFD1Q92890 307 aa15.08■□□□□ 0
CLN3-252ENST00000636907 DTNBP1Q96EV8 351 aa15.08■□□□□ 0
CLN3-252ENST00000636907 OXGR1Q96P68 337 aa15.08■□□□□ 0
CLN3-252ENST00000636907 KCNK17Q96T54 332 aa15.08■□□□□ 0
CLN3-252ENST00000636907 CENPOQ9BU64 300 aa15.08■□□□□ 0
CLN3-252ENST00000636907 EMC6Q9BV81 110 aa15.08■□□□□ 0
CLN3-252ENST00000636907 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.08■□□□□ 0
CLN3-252ENST00000636907 RNF167Q9H6Y7 350 aa15.08■□□□□ 0
CLN3-252ENST00000636907 B4GALT7Q9UBV7 327 aa15.08■□□□□ 0
CLN3-252ENST00000636907 ZMIZ1Q9ULJ6 1067 aa15.08■□□□□ 0
CLN3-252ENST00000636907 IGLV1-36A0A0B4J1U3 117 aa15.07■□□□□ 0
CLN3-252ENST00000636907 LRRTM2O43300 516 aa15.07■□□□□ 0
CLN3-252ENST00000636907 SEC14L5O43304 696 aa15.07■□□□□ 0
CLN3-252ENST00000636907 TRAF3IP2O43734 574 aaPredicted RBP15.07■□□□□ 0
CLN3-252ENST00000636907 SLC16A7O60669 478 aa15.07■□□□□ 0
CLN3-252ENST00000636907 HPNP05981 417 aa15.07■□□□□ 0
CLN3-252ENST00000636907 SPINK2P20155 84 aa15.07■□□□□ 0
CLN3-252ENST00000636907 PSMA1P25786 263 aaKnown RBP15.07■□□□□ 0
CLN3-252ENST00000636907 CRYBB2P43320 205 aa15.07■□□□□ 0
CLN3-252ENST00000636907 MEOX1P50221 254 aa15.07■□□□□ 0
CLN3-252ENST00000636907 GFRA1P56159 465 aa15.07■□□□□ 0
CLN3-252ENST00000636907 OR12D2P58182 307 aa15.07■□□□□ 0
CLN3-252ENST00000636907 CSNK2A1P68400 391 aaPredicted RBP15.07■□□□□ 0
CLN3-252ENST00000636907 DEFB109BQ30KR1 87 aa15.07■□□□□ 0
CLN3-252ENST00000636907 TIMM50Q3ZCQ8 353 aa15.07■□□□□ 0
CLN3-252ENST00000636907 SLC16A9Q7RTY1 509 aa15.07■□□□□ 0
CLN3-252ENST00000636907 GGNQ86UU5 652 aa15.07■□□□□ 0
CLN3-252ENST00000636907 C4orf36Q96KX1 117 aa15.07■□□□□ 0
CLN3-252ENST00000636907 TSPAN10Q9H1Z9 355 aaPredicted RBP15.07■□□□□ 0
CLN3-252ENST00000636907 BABAM2Q9NXR7 383 aa15.07■□□□□ 0
CLN3-252ENST00000636907 STUB1Q9UNE7 303 aa15.07■□□□□ 0
CLN3-252ENST00000636907 CNTRLQ7Z7A1 2325 aa15.07■□□□□ 0
CLN3-252ENST00000636907 IGHV3-15A0A0B4J1V0 119 aa15.06■□□□□ 0
CLN3-252ENST00000636907 FAM166BA8MTA8 275 aa15.06■□□□□ 0
CLN3-252ENST00000636907 VGLL3A8MV65 326 aa15.06■□□□□ 0
CLN3-252ENST00000636907 J3QLW9 94 aa15.06■□□□□ 0
CLN3-252ENST00000636907 DLL1O00548 723 aa15.06■□□□□ 0
CLN3-252ENST00000636907 EIF1BO60739 113 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 MT-ND5P03915 603 aa15.06■□□□□ 0
CLN3-252ENST00000636907 CELA3AP09093 270 aa15.06■□□□□ 0
CLN3-252ENST00000636907 ZNF19P17023 458 aa15.06■□□□□ 0
CLN3-252ENST00000636907 STARP49675 285 aa15.06■□□□□ 0
CLN3-252ENST00000636907 PLGLB1Q02325 96 aa15.06■□□□□ 0
CLN3-252ENST00000636907 ETFDHQ16134 617 aa15.06■□□□□ 0
CLN3-252ENST00000636907 ZHX1-C8orf76Q96EF9 292 aa15.06■□□□□ 0
CLN3-252ENST00000636907 FOXN4Q96NZ1 517 aa15.06■□□□□ 0
CLN3-252ENST00000636907 SRXN1Q9BYN0 137 aa15.06■□□□□ 0
CLN3-252ENST00000636907 MARCH7Q9H992 704 aa15.06■□□□□ 0
CLN3-252ENST00000636907 SF3B6Q9Y3B4 125 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 ALPK2Q86TB3 2170 aa15.06■□□□□ 0
CLN3-252ENST00000636907 LOC102725191A0A1B0GVB3 256 aa15.06■□□□□ 0
CLN3-252ENST00000636907 KLRC4-KLRK1H3BQV0 150 aa15.06■□□□□ 0
CLN3-252ENST00000636907 EIF1AYO14602 144 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 MAGEB4O15481 346 aaPredicted RBP15.06■□□□□ 0
CLN3-252ENST00000636907 EFSO43281 561 aa15.06■□□□□ 0
CLN3-252ENST00000636907 GLSO94925 669 aaPredicted RBP15.06■□□□□ 0
CLN3-252ENST00000636907 ZNF43P17038 809 aa15.06■□□□□ 0
CLN3-252ENST00000636907 CELP19835 753 aa15.06■□□□□ 0
CLN3-252ENST00000636907 PEX19P40855 299 aa15.06■□□□□ 0
CLN3-252ENST00000636907 MAGEA5P43359 124 aa15.06■□□□□ 0
CLN3-252ENST00000636907 CENPAP49450 140 aa15.06■□□□□ 0
CLN3-252ENST00000636907 SUCLG1P53597 346 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 SH3BGRP55822 239 aaPredicted RBP15.06■□□□□ 0
CLN3-252ENST00000636907 RPS25P62851 125 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 BDH1Q02338 343 aa15.06■□□□□ 0
CLN3-252ENST00000636907 FMODQ06828 376 aa15.06■□□□□ 0
CLN3-252ENST00000636907 TP53I3Q53FA7 332 aa15.06■□□□□ 0
CLN3-252ENST00000636907 ZNF766Q5HY98 468 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms