RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PNPLA2Q96AD5 504 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 NMD3Q96D46 503 aaKnown RBP9.47□□□□□ -0.89
CLN3-248ENST00000636355 ADGRG7Q96K78 797 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 UBL7Q96S82 380 aaPredicted RBP9.47□□□□□ -0.89
CLN3-248ENST00000636355 SMAD5Q99717 465 aaKnown RBP9.47□□□□□ -0.89
CLN3-248ENST00000636355 ALG8Q9BVK2 526 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TSPAN10Q9H1Z9 355 aaPredicted RBP9.47□□□□□ -0.89
CLN3-248ENST00000636355 SYT4Q9H2B2 425 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 TMEM185BQ9H7F4 350 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 ACKR4Q9NPB9 350 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 CLEC2DQ9UHP7 191 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 KCNG2Q9UJ96 466 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 STUB1Q9UNE7 303 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 RCE1Q9Y256 329 aa9.47□□□□□ -0.89
CLN3-248ENST00000636355 PCDHGA9Q9Y5G4 932 aaKnown RBP9.47□□□□□ -0.89
CLN3-248ENST00000636355 CACNA1GO43497 2377 aa9.46□□□□□ -0.89
CLN3-248ENST00000636355 TRAV17A0A0B4J275 112 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ZNF670-ZNF695F2Z2N8 137 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 NKX2-8O15522 239 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 TLX3O43711 291 aaPredicted RBP9.46□□□□□ -0.9
CLN3-248ENST00000636355 SERPINI2O75830 405 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ACTL6AO96019 429 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 GYPBP06028 91 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 CD1AP06126 327 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 HSMCR30P0CW71 290 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 PRKAR1AP10644 381 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 CLUP10909 449 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 IFNGR1P15260 489 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ZNF43P17038 809 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 POU3F2P20265 443 aaPredicted RBP9.46□□□□□ -0.9
CLN3-248ENST00000636355 GPR85P60893 370 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 SSX1Q16384 188 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 TSTQ16762 297 aaKnown RBP9.46□□□□□ -0.9
CLN3-248ENST00000636355 ZNF766Q5HY98 468 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 THEM4Q5T1C6 240 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ATP1A1-AS1Q5TC04 95 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 CD200R1LQ6Q8B3 271 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 IGFL3Q6UXB1 125 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 NHLRC1Q6VVB1 395 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 LINC00696Q6ZRV3 163 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 USP43Q70EL4 1123 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 GGNQ86UU5 652 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 SULF2Q8IWU5 870 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 PHC2Q8IXK0 858 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 TIGD4Q8IY51 512 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 TMEM99Q8N816 258 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ZNF454Q8N9F8 522 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 OR2V1Q8NHB1 315 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ZPLD1Q8TCW7 415 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ASB17Q8WXJ9 295 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 ZMYND19Q96E35 227 aaPredicted RBP9.46□□□□□ -0.9
CLN3-248ENST00000636355 SLC25A44Q96H78 314 aaPredicted RBP9.46□□□□□ -0.9
CLN3-248ENST00000636355 INTS14Q96SY0 518 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 WDR76Q9H967 626 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 WASF3Q9UPY6 502 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 MSRB2Q9Y3D2 182 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 A3GALT2U3KPV4 340 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 CACNA1BQ00975 2339 aa9.46□□□□□ -0.9
CLN3-248ENST00000636355 TNRC6AQ8NDV7 1962 aaKnown RBP9.46□□□□□ -0.9
CLN3-248ENST00000636355 A0A1W2PNR3 127 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 A0A1W2PQL4 384 aaPredicted RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 ARHGEF9O43307 516 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 SULT1C4O75897 302 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 APOL3O95236 402 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 PLGP00747 810 aaPredicted RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 TFP02787 698 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 RFPL3SP0C7P2 107 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 PGA4P0DJD7 388 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 PGA3P0DJD8 388 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 WT1P19544 449 aaPredicted RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 SHC1P29353 583 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 UGT2B10P36537 528 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 SERPINB10P48595 397 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 MEOX1P50221 254 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 ZNF133P52736 654 aaPredicted RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 PLGLB1Q02325 96 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 EGR3Q06889 387 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 TOMM20Q15388 145 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 INAQ16352 499 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 TEX30Q5JUR7 227 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 HBMQ6B0K9 141 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 TMEM225Q6GV28 225 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 PLEKHG7Q6ZR37 379 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 SHFQ7M4L6 423 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 GALNTL5Q7Z4T8 443 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 CDC20BQ86Y33 519 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 PM20D2Q8IYS1 436 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 OR6V1Q8N148 313 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 ATP6V1C2Q8NEY4 427 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 INTS12Q96CB8 462 aaKnown RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 DACH2Q96NX9 599 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 MRPL13Q9BYD1 178 aaKnown RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 NAA50Q9GZZ1 169 aaKnown RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 NUAK2Q9H093 628 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 KCNN2Q9H2S1 579 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 ZDHHC11Q9H8X9 412 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 BABAM2Q9NXR7 383 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 CCDC59Q9P031 241 aaKnown RBP9.45□□□□□ -0.9
CLN3-248ENST00000636355 KLHL9Q9P2J3 617 aa9.45□□□□□ -0.9
CLN3-248ENST00000636355 KLK13Q9UKR3 277 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms