RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RFLNBQ8N5W9 214 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 LRRC17Q8N6Y2 441 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 HIPK4Q8NE63 616 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 OR5J2Q8NH18 312 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 CLDND2Q8NHS1 167 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 YIPF5Q969M3 257 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 SH3GL3Q99963 347 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.87□□□□□ -0.197e-9■■□□□ 13.5
CLN3-246ENST00000636228 EVPLLA8MZ36 301 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 FAM157AC9JC47 383 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 KPNA4O00629 521 aaPredicted RBP13.86□□□□□ -0.19
CLN3-246ENST00000636228 NCR1O76036 304 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 CH25HO95992 272 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 THY1P04216 161 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 CCL2P13500 99 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 GPR6P46095 362 aaPredicted RBP13.86□□□□□ -0.19
CLN3-246ENST00000636228 DVL1P1P54792 670 aaPredicted RBP13.86□□□□□ -0.19
CLN3-246ENST00000636228 SELPLGQ14242 412 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 RUNDC3AQ59EK9 446 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 DLEU7Q6UYE1 221 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 SLC35D2Q76EJ3 337 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 PTOV1Q86YD1 416 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 GPR32P1Q8NGA4 272 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 OR4D11Q8NGI4 311 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 OR6T1Q8NGN1 323 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 RDH5Q92781 318 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 TMEM54Q969K7 222 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 C7orf26Q96N11 449 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 CPPED1Q9BRF8 314 aaPredicted RBP13.86□□□□□ -0.19
CLN3-246ENST00000636228 TMEM43Q9BTV4 400 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 OR51B6Q9H340 312 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 MS4A5Q9H3V2 200 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 OCEL1Q9H607 264 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 TAS2R5Q9NYW4 299 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 TREM2Q9NZC2 230 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 GLTPQ9NZD2 209 aa13.86□□□□□ -0.19
CLN3-246ENST00000636228 NBEAL1Q6ZS30 2694 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 B4DSR2 109 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 M0QX08 132 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 RGS9O75916 674 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 UBL3O95164 117 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 OR6A2O95222 327 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 TGDSO95455 350 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 CLPTM1O96005 669 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 FAM157BP0CG42 384 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 ENTPD8Q5MY95 495 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 LRFN4Q6PJG9 635 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 LINC00114Q6XXX2 140 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 TSPYL5Q86VY4 417 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 SLC22A24Q8N4F4 322 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 PAQR4Q8N4S7 273 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 VANGL1Q8TAA9 524 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 TSPAN32Q96QS1 320 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 ARHGDIGQ99819 225 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 CCDC28BQ9BUN5 200 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 METTL17Q9H7H0 456 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 ZNF275Q9NSD4 429 aaPredicted RBP13.85□□□□□ -0.19
CLN3-246ENST00000636228 HIF1ANQ9NWT6 349 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 METRNQ9UJH8 293 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 ANGPT4Q9Y264 503 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 GMEB1Q9Y692 573 aa13.85□□□□□ -0.19
CLN3-246ENST00000636228 A0A1W2PPW3 197 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 PPIHO43447 177 aaKnown RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 RNF13O43567 381 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 VENTXO95231 258 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 LYPD3O95274 346 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 MT-ATP6P00846 226 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 SERPINA5P05154 406 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 SAGP10523 405 aaPredicted RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 MAGEB1P43366 347 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 MTPNP58546 118 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 ERVS71-1P61550 626 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 BEND6Q5SZJ8 279 aaPredicted RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 THSD4Q6ZMP0 1018 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 PIWIL3Q7Z3Z3 882 aaKnown RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 GLCCI1Q86VQ1 547 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 SNX32Q86XE0 403 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 BHLHE22Q8NFJ8 381 aaPredicted RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 OR6X1Q8NH79 312 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 LRRC8CQ8TDW0 803 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 THOC1Q96FV9 657 aaKnown RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 DENND2DQ9H6A0 471 aaPredicted RBP13.84□□□□□ -0.19
CLN3-246ENST00000636228 TAAR3PQ9P1P4 343 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 SLC7A7Q9UM01 511 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 CORO2BQ9UQ03 480 aa13.84□□□□□ -0.19
CLN3-246ENST00000636228 CHP2O43745 196 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 CDC14BO60729 498 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 ACHEP22303 614 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 PCBP3P57721 371 aaKnown RBP13.83□□□□□ -0.2
CLN3-246ENST00000636228 ZNF74Q16587 644 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 CYP51A1Q16850 503 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 NKPD1Q17RQ9 610 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 SWT1Q5T5J6 900 aaKnown RBP13.83□□□□□ -0.2
CLN3-246ENST00000636228 ZNF613Q6PF04 617 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 TTC33Q6PID6 262 aaPredicted RBP13.83□□□□□ -0.2
CLN3-246ENST00000636228 C11orf65Q8NCR3 313 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 SLC30A7Q8NEW0 376 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 OR4K5Q8NGD3 323 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 ZNF566Q969W8 418 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms