RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 CUTCQ9NTM9 273 aa10.54□□□□□ -0.72
LINC00538-201ENST00000626109 SSR3Q9UNL2 185 aa10.54□□□□□ -0.72
LINC00538-201ENST00000626109 SLC22A7Q9Y694 548 aa10.54□□□□□ -0.72
LINC00538-201ENST00000626109 TRBV4-1A0A0J9YWV2 114 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 A0A1W2PRX2 142 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 H3BMH7 237 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 FFAR1O14842 300 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ZNF749O43361 778 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 SCRG1O75711 98 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 HBQ1P09105 142 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 GSTM3P21266 225 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 TPTEP56180 551 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ACTBP60709 375 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ACTA2P62736 377 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ACTG1P63261 375 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ACTG2P63267 376 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ACTC1P68032 377 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 ACTA1P68133 377 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 HSPB3Q12988 150 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 SPHARQ15513 63 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 LIPNQ5VXI9 398 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 DGAT2L7PQ6IED9 249 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 TCTN3Q6NUS6 607 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 DEF8Q6ZN54 512 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 CCDC190Q86UF4 302 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 CYP4Z2PQ8N1L4 340 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 SNIP1Q8TAD8 396 aaKnown RBP10.53□□□□□ -0.72
LINC00538-201ENST00000626109 NR4A3Q92570 626 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 SLC25A36Q96CQ1 311 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 C17orf62Q9BQA9 187 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 DDA1Q9BW61 102 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 KLHL31Q9H511 634 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 EXOSC4Q9NPD3 245 aaKnown RBP10.53□□□□□ -0.72
LINC00538-201ENST00000626109 NPAP1Q9NZP6 1156 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 TBC1D24Q9ULP9 559 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 STUB1Q9UNE7 303 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 TRAPPC4Q9Y296 219 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 WDR87Q6ZQQ6 2873 aa10.53□□□□□ -0.72
LINC00538-201ENST00000626109 HMGN4O00479 90 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 ITGB1BP1O14713 200 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 MYL12BO14950 172 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 ABHD16AO95870 558 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 GTF2E2P29084 291 aaKnown RBP10.52□□□□□ -0.72
LINC00538-201ENST00000626109 TACR3P29371 465 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 SSR2P43308 183 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 CRISP3P54108 245 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 RAB8AP61006 207 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 FOXC1Q12948 553 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 FAM53BQ14153 422 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 KLHL22Q53GT1 634 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 SLC25A30Q5SVS4 291 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 RGS7BPQ6MZT1 257 aaPredicted RBP10.52□□□□□ -0.72
LINC00538-201ENST00000626109 PWWP2BQ6NUJ5 590 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 CD300LDQ6UXZ3 194 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 HAS2Q92819 552 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 EXOSC8Q96B26 276 aaKnown RBP10.52□□□□□ -0.72
LINC00538-201ENST00000626109 MAP6Q96JE9 813 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 MEGF10Q96KG7 1140 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 SLC35G5Q96KT7 338 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 C10orf90Q96M02 699 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 KLHL15Q96M94 604 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 ASPNQ9BXN1 380 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 AICDAQ9GZX7 198 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 CLEC2DQ9UHP7 191 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 CEP250Q9BV73 2442 aa10.52□□□□□ -0.72
LINC00538-201ENST00000626109 A0A0G2JN53 185 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 FAM47E-STBD1D6RA91 191 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 LINC01387J3KSC0 135 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 M0R129 80 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 TIAF1O95411 115 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 AHSA1O95433 338 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 NTSP30990 170 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 IFNGR2P38484 337 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 TSFMP43897 325 aaKnown RBP10.52□□□□□ -0.73
LINC00538-201ENST00000626109 AVPR1BP47901 424 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 NRG3P56975 720 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 BTN3A2P78410 334 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 ACSM1Q08AH1 577 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 MLLT11Q13015 90 aaPredicted RBP10.52□□□□□ -0.73
LINC00538-201ENST00000626109 NRN1LQ496H8 165 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 DEFB134Q4QY38 66 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 FBLN7Q53RD9 439 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 PRAMEF17Q5VTA0 474 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 OR4C11Q6IEV9 310 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 RHBDD2Q6NTF9 364 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 TTLL10Q6ZVT0 673 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 MED25Q71SY5 747 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 MARCH9Q86YJ5 346 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 FAM219AQ8IW50 185 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 NANOGP1Q8N7R0 232 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 FAM83FQ8NEG4 500 aaPredicted RBP10.52□□□□□ -0.73
LINC00538-201ENST00000626109 GPR32P1Q8NGA4 272 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 OR4D6Q8NGJ1 314 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 MOAP1Q96BY2 351 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 C16orf92Q96LL3 132 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 LURAP1Q96LR2 239 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 FAM110AQ9BQ89 295 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 TSSK6Q9BXA6 273 aa10.52□□□□□ -0.73
LINC00538-201ENST00000626109 ZNF717Q9BY31 904 aaPredicted RBP10.52□□□□□ -0.73
LINC00538-201ENST00000626109 POLDIP3Q9BY77 421 aaKnown RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms