RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CD200R1LQ6Q8B3 271 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 HIST3H2AQ7L7L0 130 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF454Q8N9F8 522 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 THAP4Q8WY91 577 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 HIST1H2ACQ93077 130 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 C12orf57Q99622 126 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 CTSFQ9UBX1 484 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 GPN3Q9UHW5 284 aaPredicted RBP13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 A0A1B0GTH9 108 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF98A6NK75 572 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF749O43361 778 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 F10P00742 488 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 RBMS1P29558 406 aaKnown RBP13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 PSMA6P60900 246 aaKnown RBP13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 PYHIN1Q6K0P9 492 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 OR6C1Q96RD1 312 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 TMEM185BQ9H7F4 350 aa13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 AKAP7Q9P0M2 348 aaPredicted RBP13.19□□□□□ -0.3
SHROOM1-208ENST00000617339 TRABD2BA6NFA1 517 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 HEXBP07686 556 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 CBX5P45973 191 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF169Q14929 603 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 C14orf28Q4W4Y0 310 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF322Q6U7Q0 402 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 SLC35F3Q8IY50 421 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 LINC00471Q8N535 108 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 RHBDD1Q8TEB9 315 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 EDAQ92838 391 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 HGDQ93099 445 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 C8orf44Q96CB5 159 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 TCTN2Q96GX1 697 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF768Q9H5H4 540 aaKnown RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZMAT5Q9UDW3 170 aaKnown RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 SIGLEC7Q9Y286 467 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF175Q9Y473 711 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 G3V3Q6 166 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 SCDO00767 359 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 HOXC4P09017 264 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF3P17036 446 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ANXA7P20073 488 aaKnown RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 S1PR1P21453 382 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 PTBP1P26599 531 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 CLDN12P56749 244 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 SQSTM1Q13501 440 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 NHLRC3Q5JS37 347 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 MEPCEQ7L2J0 689 aaKnown RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 OR5J2Q8NH18 312 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 CCDC74AQ96AQ1 378 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 UQCC2Q9BRT2 126 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 RTN4RQ9BZR6 473 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 FANCFQ9NPI8 374 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 MKKSQ9NPJ1 570 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 IKZF2Q9UKS7 526 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 SHISA8B8ZZ34 492 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 RNLSQ5VYX0 342 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 RGS7BPQ6MZT1 257 aaPredicted RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 TMEM88Q6PEY1 159 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 OR52B4Q8NGK2 314 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ACOT12Q8WYK0 555 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 ZNF524Q96C55 264 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 C5orf34Q96MH7 638 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 MOGAT1Q96PD6 335 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 DMRTA2Q96SC8 542 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 SLC25A18Q9H1K4 315 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 DNAJB12Q9NXW2 375 aaKnown RBP13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 PTTG3PQ9NZH4 202 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 CYB5R1Q9UHQ9 305 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 KIF25Q9UIL4 384 aa13.18□□□□□ -0.3
SHROOM1-208ENST00000617339 NPR2P20594 1047 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 LGALS3BPQ08380 585 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 BAMBIQ13145 260 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 CEBPEQ15744 281 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 TMEM255AQ5JRV8 349 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 TFAP2EQ6VUC0 442 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 OR5W2Q8NH69 310 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 OR1L3Q8NH93 324 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 FAM131CQ96AQ9 280 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 WBP1Q96G27 269 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 VDAC3Q9Y277 283 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 AK6Q9Y3D8 172 aaKnown RBP13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 KRBOX1C9JBD0 128 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 NDUFA2O43678 99 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 PRAMEF2O60811 474 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 NME1P15531 152 aaKnown RBP13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 F8A1P23610 371 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 GDNFP39905 211 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 CCR5P51681 352 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 FAM74A1Q5RGS3 127 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 ELP2Q6IA86 826 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 LEG1Q6P5S2 330 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 BTN2A1Q7KYR7 527 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 GPR119Q8TDV5 335 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 MLXQ9UH92 298 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 PEX14O75381 377 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 KHDRBS3O75525 346 aaKnown RBP13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 NFYAP23511 347 aaPredicted RBP13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 ACAA2P42765 397 aaKnown RBP13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 SLC29A4Q7RTT9 530 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 SLC25A45Q8N413 288 aa13.17□□□□□ -0.3
SHROOM1-208ENST00000617339 POGLUT1Q8NBL1 392 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 173.2 ms