RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 C11orf49Q9H6J7 331 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 FLRT3Q9NZU0 649 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 GPN3Q9UHW5 284 aaPredicted RBP11.52□□□□□ -0.57
LIG1-221ENST00000613670 KIF25Q9UIL4 384 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 SLC22A13Q9Y226 551 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 TP53BP1Q12888 1972 aaPredicted RBP11.52□□□□□ -0.57
LIG1-221ENST00000613670 CXorf51AA0A1B0GTR3 108 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 SULT1B1O43704 296 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 SRPX2O60687 465 aaPredicted RBP11.51□□□□□ -0.57
LIG1-221ENST00000613670 GNRH1P01148 92 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 CD14P08571 375 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 AKT2P31751 481 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 RAG2P55895 527 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 EIF2B5Q13144 721 aaKnown RBP11.51□□□□□ -0.57
LIG1-221ENST00000613670 STK11Q15831 433 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 HAVCR1Q96D42 359 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 MRI1Q9BV20 369 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 AICDAQ9GZX7 198 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 KIR3DX1Q9H7L2 352 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 THAP10Q9P2Z0 257 aaPredicted RBP11.51□□□□□ -0.57
LIG1-221ENST00000613670 EPHA6Q9UF33 1036 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 FBXO4Q9UKT5 387 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 FOXJ3Q9UPW0 622 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 RTTNQ86VV8 2226 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 FNDC1Q4ZHG4 1894 aaPredicted RBP11.51□□□□□ -0.57
LIG1-221ENST00000613670 SERINC4A6NH21 518 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 TMEM150CB9EJG8 249 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 SUSD5O60279 629 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 BRINP1O60477 761 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 DRD3P35462 400 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 FGL1Q08830 312 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 PEG10Q86TG7 708 aaKnown RBP11.51□□□□□ -0.57
LIG1-221ENST00000613670 PM20D2Q8IYS1 436 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 RCBTB1Q8NDN9 531 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 SPPL3Q8TCT6 385 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 DCUN1D4Q92564 292 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 MIB2Q96AX9 1013 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 SLC38A3Q99624 504 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 TEX101Q9BY14 249 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 STEAP1Q9UHE8 339 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 PCDHGA5Q9Y5G8 931 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 A0A0B4J2E0 115 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 A0A1B0GX12 115 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 NDUFB6O95139 128 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 FAM157BP0CG42 384 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 TMEM255AQ5JRV8 349 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 PWWP2BQ6NUJ5 590 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 KDM8Q8N371 416 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 OR4C3Q8NH37 302 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 THAP3Q8WTV1 239 aaPredicted RBP11.51□□□□□ -0.57
LIG1-221ENST00000613670 HGDQ93099 445 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 ST6GALNAC2Q9UJ37 374 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 BPTFQ12830 3046 aa11.51□□□□□ -0.57
LIG1-221ENST00000613670 EML2O95834 649 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 TIMP1P01033 207 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 IGF2P01344 180 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 SFTPBP07988 381 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 GP1BBP13224 206 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 MAOAP21397 527 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 ZP3P21754 424 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 CEBPGP53567 150 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 TAS2R19P59542 299 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 SLC18B1Q6NT16 456 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 MRGPREQ86SM8 312 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 DND1Q8IYX4 353 aaKnown RBP11.5□□□□□ -0.57
LIG1-221ENST00000613670 FAM71CQ8NEG0 241 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 ZPLD1Q8TCW7 415 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 GDF15Q99988 308 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 SNAPC5O75971 98 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 ZP1P60852 638 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 OR10AC1Q8NH08 325 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 PHYHIPQ92561 330 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 STACQ99469 402 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 PLEKHA1Q9HB21 404 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 CABIN1Q9Y6J0 2220 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 AHSA1O95433 338 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 TNFP01375 233 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 TACR3P29371 465 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 EFNB1P98172 346 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 MFSD13AQ14CX5 517 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 DEFB119Q8N690 84 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 EID2Q8N6I1 236 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 ZNF485Q8NCK3 441 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 OR14A16Q8NHC5 309 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 STOML3Q8TAV4 291 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 NRSN2Q9GZP1 204 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 GBF1Q92538 1859 aa11.5□□□□□ -0.57
LIG1-221ENST00000613670 TMEM235A6NFC5 223 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 CALCBP10092 127 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 RASGEF1BQ0VAM2 473 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 C2orf76Q3KRA6 126 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 C3orf33Q6P1S2 294 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 NUP54Q7Z3B4 507 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 SPRED2Q7Z698 418 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 AVL9Q8NBF6 648 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 APMAPQ9HDC9 416 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 CPNE7Q9UBL6 633 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 TBX21Q9UL17 535 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 A0A0B4J2A0 478 aa11.49□□□□□ -0.57
LIG1-221ENST00000613670 A0A0G2JK05 382 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms