RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 BBS10Q8TAM1 723 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 ZNF519Q8TB69 540 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 SYNPRQ8TBG9 265 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 PNPT1Q8TCS8 783 aaKnown RBP5.4□□□□□ -1.54
CUX1-220ENST00000607092 ST7LQ8TDW4 575 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 POP5Q969H6 163 aaKnown RBP5.4□□□□□ -1.54
CUX1-220ENST00000607092 ELMOD3Q96FG2 381 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 SLC47A1Q96FL8 570 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 OR2M2Q96R28 347 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 OR52E6Q96RD3 313 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 DIRC2Q96SL1 478 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 ULBP2Q9BZM5 246 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 LPAR2Q9HBW0 351 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 NPHS2Q9NP85 383 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 A4GALTQ9NPC4 353 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 HINT3Q9NQE9 182 aaKnown RBP5.4□□□□□ -1.54
CUX1-220ENST00000607092 CYSLTR2Q9NS75 346 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 ZNF275Q9NSD4 429 aaPredicted RBP5.4□□□□□ -1.54
CUX1-220ENST00000607092 DECR2Q9NUI1 292 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 B3GNT2Q9NY97 397 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 TREM2Q9NZC2 230 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 LGALS13Q9UHV8 139 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 SLC13A4Q9UKG4 626 aa5.4□□□□□ -1.54
CUX1-220ENST00000607092 ZNF443Q9Y2A4 671 aaPredicted RBP5.4□□□□□ -1.54
CUX1-220ENST00000607092 WNK1Q9H4A3 2382 aa5.4□□□□□ -1.55
CUX1-220ENST00000607092 A0A087WUJ7 227 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 A0A0G2JK05 382 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 IGHV1-69-2A0A0G2JMI3 117 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 IQCMA0A1B0GVH7 501 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 PLSCR5A0PG75 271 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 GMNCA6NCL1 334 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 TRPC5OSA6NMA1 111 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 LYNX1G3V0Z9 82 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 M0R082 166 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 M0R3G1 203 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 EREGO14944 169 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 TM9SF1O15321 606 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 TRAF3IP2O43734 574 aaPredicted RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 OR6A2O95222 327 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SNAP29O95721 258 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 MT-ATP6P00846 226 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 HLA-HP01893 362 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 BCHEP06276 602 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 CELA3BP08861 270 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 GKN3PP0CG01 181 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 OR8G3PP0DMU2 310 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 LYNX1P0DP58 116 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 HKR1P10072 659 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 NR2C1P13056 603 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ETS2P15036 469 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 GRPRP30550 384 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 PRKAR1BP31321 381 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 RPS5P46782 204 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 PTDSS1P48651 473 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 CSNK1A1P48729 337 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ATP4BP51164 291 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 DSTNP60981 165 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ABCE1P61221 599 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 IL13RA1P78552 427 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 PUDPQ08623 228 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 BNIP2Q12982 314 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 FADDQ13158 208 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 TBC1D28Q2M2D7 210 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SLC36A2Q495M3 483 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 PDLIM3Q53GG5 364 aaPredicted RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 TNFAIP8L3Q5GJ75 292 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 TMEM53Q6P2H8 277 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 LINGO2Q7L985 606 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 OLIG3Q7RTU3 272 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 PXKQ7Z7A4 578 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ZCCHC24Q8N2G6 241 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 ZNF417Q8TAU3 575 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SLC25A28Q96A46 364 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SLC41A3Q96GZ6 507 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ITCHQ96J02 903 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ZNF587Q96SQ5 575 aaPredicted RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 FOXB1Q99853 325 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SYT3Q9BQG1 590 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SLC19A3Q9BZV2 496 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SLITRK2Q9H156 845 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 KCNN2Q9H2S1 579 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 NARFLQ9H6Q4 476 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 C7orf69Q9H7B7 122 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 MEAF6Q9HAF1 191 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SAP30LQ9HAJ7 183 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 TMEM27Q9HBJ8 222 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 CDH20Q9HBT6 801 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 BCL2L10Q9HD36 194 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 SSU72Q9NP77 194 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 G6PC2Q9NQR9 355 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 RLIMQ9NVW2 624 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 SLC17A7Q9P2U7 560 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 STX18Q9P2W9 335 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 TESQ9UGI8 421 aaKnown RBP5.39□□□□□ -1.55
CUX1-220ENST00000607092 HAO1Q9UJM8 370 aa5.39□□□□□ -1.55
CUX1-220ENST00000607092 IGLV3-9A0A075B6K5 115 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 LOC105371242A0A075B767 164 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 H3BSA7 217 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 CLDN34H7C241 214 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms