RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 UBASH3BQ8TF42 649 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 TSPEARQ8WU66 669 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 TMEM54Q969K7 222 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 MRPL24Q96A35 216 aaKnown RBP6.57□□□□□ -1.36
CUX1-219ENST00000606749 MAGEB18Q96M61 343 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 FOXB1Q99853 325 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 ULBP2Q9BZM5 246 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 KAT8Q9H7Z6 458 aaKnown RBP6.57□□□□□ -1.36
CUX1-219ENST00000606749 CHODLQ9H9P2 273 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 GLTPQ9NZD2 209 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 REV1Q9UBZ9 1251 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 SPEF1Q9Y4P9 236 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 ATRQ13535 2644 aa6.57□□□□□ -1.36
CUX1-219ENST00000606749 TRAPPC13A5PLN9 417 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 HMGB1P1B2RPK0 211 aaPredicted RBP6.56□□□□□ -1.36
CUX1-219ENST00000606749 LYNX1G3V0Z9 82 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 ANGPT2O15123 496 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 SYNGR3O43761 229 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 OR6A2O95222 327 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 HIST1H2ABP04908 130 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 SERPINA5P05154 406 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 PATE4P0C8F1 98 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 OR8G3PP0DMU2 310 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 LYNX1P0DP58 116 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 CD247P20963 164 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 IL2RGP31785 369 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 PCGF2P35227 344 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 GLRXP35754 106 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 GIPRP48546 466 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 CSNK1A1P48729 337 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 CHN2P52757 468 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 NFYCQ13952 458 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 RAB39AQ14964 217 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 FXNQ16595 210 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 TRMT5Q32P41 509 aaKnown RBP6.56□□□□□ -1.36
CUX1-219ENST00000606749 KRTAP24-1Q3LI83 254 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 SLC35D2Q76EJ3 337 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 HIST3H2AQ7L7L0 130 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 PATL1Q86TB9 770 aaKnown RBP6.56□□□□□ -1.36
CUX1-219ENST00000606749 SLC30A8Q8IWU4 369 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 SLC22A24Q8N4F4 322 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 OR10A6Q8NH74 314 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 VANGL1Q8TAA9 524 aaPredicted RBP6.56□□□□□ -1.36
CUX1-219ENST00000606749 SLC26A7Q8TE54 656 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 HPS1Q92902 700 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 HIST1H2ACQ93077 130 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 TAMM41Q96BW9 452 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 SLC25A44Q96H78 314 aaPredicted RBP6.56□□□□□ -1.36
CUX1-219ENST00000606749 MPP4Q96JB8 637 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 ZNF426Q9BUY5 554 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 MRPL37Q9BZE1 423 aaKnown RBP6.56□□□□□ -1.36
CUX1-219ENST00000606749 PCDHAC1Q9H158 963 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 TPK1Q9H3S4 243 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 MS4A5Q9H3V2 200 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 DYNLRB1Q9NP97 96 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 NANSQ9NR45 359 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 SLC7A7Q9UM01 511 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 TRIM33Q9UPN9 1127 aa6.56□□□□□ -1.36
CUX1-219ENST00000606749 M0R233 179 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 FBP2O00757 339 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 DHHO43323 396 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 RNF13O43567 381 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 EDF1O60869 148 aaKnown RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 UBL3O95164 117 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 RAB36O95755 333 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 QDPRP09417 244 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 ASAH2BP0C7U1 165 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 PGA4P0DJD7 388 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 PGA3P0DJD8 388 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 TCN1P20061 433 aaPredicted RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 HNF1AP20823 631 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 COL8A2P25067 703 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 CRYBA2P53672 197 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 SEC24CP53992 1094 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 GALK2Q01415 458 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 CYLC2Q14093 348 aaPredicted RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 TRIP10Q15642 601 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 CR1LQ2VPA4 569 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 ELFN2Q5R3F8 820 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 INTS11Q5TA45 600 aaKnown RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 GKAP1Q5VSY0 366 aaPredicted RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 METTL21CQ5VZV1 264 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 NANOGP8Q6NSW7 305 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 CCDC80Q76M96 950 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 HDXQ7Z353 690 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 LRP11Q86VZ4 500 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 ZNF584Q8IVC4 421 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 LINC01356Q8N9X3 169 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 ZNF566Q969W8 418 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 C1orf159Q96HA4 380 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 SNX18Q96RF0 628 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 SH3GL3Q99963 347 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 SYT3Q9BQG1 590 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 PRSS27Q9BQR3 290 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 SLC19A3Q9BZV2 496 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 NANOGQ9H9S0 305 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 NPHS2Q9NP85 383 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 MEPEQ9NQ76 525 aaPredicted RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 TMEM38BQ9NVV0 291 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 MYEF2Q9P2K5 600 aaKnown RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms