RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DCAF16Q9NXF7 216 aa7.37□□□□□ -1.23
SHKBP1-220ENST00000599716 CALML5Q9NZT1 146 aa7.37□□□□□ -1.23
SHKBP1-220ENST00000599716 IFT52Q9Y366 437 aa7.37□□□□□ -1.23
SHKBP1-220ENST00000599716 SOX21Q9Y651 276 aaPredicted RBP7.37□□□□□ -1.23
SHKBP1-220ENST00000599716 A0A0A6YYJ9 748 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 TRAV20A0A0B4J274 112 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 ZNF726A6NNF4 738 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 C17orf100A8MU93 164 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 SLCO1B7G3V0H7 640 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 TRIM77I1YAP6 450 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 M0R3H8 397 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 CLIC1O00299 241 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 KPNA4O00629 521 aaPredicted RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 HDAC3O15379 428 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 TPD52L2O43399 206 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 AKAP8O43823 692 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 OR2T1O43869 369 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 FZD7O75084 574 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 DEAF1O75398 565 aaPredicted RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 IL6P05231 212 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 LCKP06239 509 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 MAKP20794 623 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 PCMT1P22061 227 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 CSNK1A1P48729 337 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 EVX1P49640 407 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 POLR2JP52435 117 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 ARFIP2P53365 341 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 CDH12P55289 794 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 WDR4P57081 412 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 TMEM33P57088 247 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 LCN2P80188 198 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 MYBPC1Q00872 1141 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 PUDPQ08623 228 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 OR1Q1Q15612 314 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 PDCD4Q53EL6 469 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 SPATA46Q5T0L3 261 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 RGS7BPQ6MZT1 257 aaPredicted RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 LRFN4Q6PJG9 635 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 C6orf89Q6UWU4 347 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 TREML4Q6UXN2 200 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 USP51Q70EK9 711 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 JAZF1Q86VZ6 243 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 IL17RDQ8NFM7 739 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 BBS10Q8TAM1 723 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 GTF2H4Q92759 462 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 SLC41A3Q96GZ6 507 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 ITCHQ96J02 903 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 IKZF5Q9H5V7 419 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 CACYBPQ9HB71 228 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 A4GALTQ9NPC4 353 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 HINT3Q9NQE9 182 aaKnown RBP7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 SLC25A37Q9NYZ2 338 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 UBAP1Q9NZ09 502 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 OPN4Q9UHM6 478 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 WIPI2Q9Y4P8 454 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 CORINQ9Y5Q5 1042 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 HYDINQ4G0P3 5121 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 PCLOQ9Y6V0 5065 aa7.36□□□□□ -1.23
SHKBP1-220ENST00000599716 TMEM247A6NEH6 219 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 C5orf58C9J3I9 102 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 C3orf80F5H4A9 247 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 PLPP3O14495 311 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 TM9SF1O15321 606 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 TMPRSS2O15393 492 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 SPRY3O43610 288 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 IGHV2-5P01817 119 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 OPN1SWP03999 348 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 THY1P04216 161 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 ZCCHC18P0CG32 403 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 ADORA3P0DMS8 318 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 OR8G3PP0DMU2 310 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 ARAFP10398 606 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 HOXB9P17482 250 aaPredicted RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 PAX7P23759 505 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 MPV17P39210 176 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 RGS8P57771 180 aaPredicted RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 UBA52P62987 128 aaKnown RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 TXNL4AP83876 142 aaKnown RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 RBBP4Q09028 425 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 LRRC74AQ0VAA2 488 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 ZP4Q12836 540 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 CEP85LQ5SZL2 805 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 HHATQ5VTY9 493 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 DCAF12L2Q5VW00 463 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 ACSM5Q6NUN0 579 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 TMEM154Q6P9G4 183 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 ULK3Q6PHR2 472 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 UGT2A3Q6UWM9 527 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 C1QL2Q7Z5L3 287 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 TSPYL5Q86VY4 417 aaPredicted RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 RBM45Q8IUH3 476 aaKnown RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 CCDC36Q8IYA8 594 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 BCL6BQ8N143 479 aaPredicted RBP7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 LRRC18Q8N456 261 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 BPIFB2Q8N4F0 458 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 SLC22A24Q8N4F4 322 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 SIGLECL1Q8N7X8 197 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 LSMEM1Q8N8F7 131 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 SMYD1Q8NB12 490 aa7.35□□□□□ -1.23
SHKBP1-220ENST00000599716 GLB1L3Q8NCI6 653 aaPredicted RBP7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms