RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TMEM200AQ86VY9 491 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 SYT14Q8NB59 555 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 OR6N1Q8NGY5 312 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF519Q8TB69 540 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 HTRA1Q92743 480 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 PLPPR2Q96GM1 343 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 POLDIP3Q9BY77 421 aaKnown RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 CLEC4MQ9H2X3 399 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 MMADHCQ9H3L0 296 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 PLEKHF2Q9H8W4 249 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 CCM2LQ9NUG4 571 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF226Q9NYT6 803 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 GLTPQ9NZD2 209 aa12.44□□□□□ -0.42
SHKBP1-217ENST00000598558 ALPK2Q86TB3 2170 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 NPIPB13A6NJU9 1138 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 NPIPB4C9JG80 1138 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 EBAG9O00559 213 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 AKAP8O43823 692 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 STAMBPO95630 424 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 CST1P01037 141 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 IGHMP01871 453 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 IGFBP1P08833 259 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 RPL27P61353 136 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 DBPQ10586 325 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 OR7E24Q6IFN5 339 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 FAM122BQ7Z309 247 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 HS3ST5Q8IZT8 346 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 C1orf162Q8NEQ5 155 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 LILRB1Q8NHL6 650 aaPredicted RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 MCHR2Q969V1 340 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF566Q969W8 418 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 Q96M85 177 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 ADAD1Q96M93 576 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 KCNK17Q96T54 332 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 KATNB1Q9BVA0 655 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 ULBP2Q9BZM5 246 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 NTN4Q9HB63 628 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 TMCC3Q9ULS5 477 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 SAMHD1Q9Y3Z3 626 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 APCP25054 2843 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 PRR14LQ5THK1 2151 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 ITPR2Q14571 2701 aa12.43□□□□□ -0.42
SHKBP1-217ENST00000598558 TIPRLO75663 272 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 CCNB2O95067 398 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 TP53P04637 393 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 CD14P08571 375 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 QDPRP09417 244 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 FPR3P25089 353 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ACVR1BP36896 505 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF83P51522 516 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 FMODQ06828 376 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 MICAQ29983 383 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ANKDD1AQ495B1 522 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 BEX5Q5H9J7 111 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 NCMAPQ5T1S8 102 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ANKRD16Q6P6B7 361 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ABHD12BQ7Z5M8 362 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 P2RY8Q86VZ1 359 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ARIH2OSQ8N7S6 290 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 FGFBP3Q8TAT2 258 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 GNPDA2Q8TDQ7 276 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 NEUROG1Q92886 237 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 POP5Q969H6 163 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 USB1Q9BQ65 265 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 TMEM204Q9BSN7 226 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 NOX3Q9HBY0 568 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 NRIP3Q9NQ35 241 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF224Q9NZL3 707 aa12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 MAGED1Q9Y5V3 778 aaPredicted RBP12.42□□□□□ -0.42
SHKBP1-217ENST00000598558 ABCA12Q86UK0 2595 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF99A8MXY4 864 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 H7C1C5 153 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 DHHO43323 396 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 NDUFB2O95178 105 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 SLC2A10O95528 541 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 IGHG1P01857 330 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 RPL4P36578 427 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 DAP3P51398 398 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF133P52736 654 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 PRPS1P60891 318 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 LCN6P62502 163 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 TGFBR3Q03167 851 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 BSPH1Q075Z2 132 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 TSPAN31Q12999 210 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 RFX4Q33E94 735 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 MESTQ5EB52 335 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 C1orf146Q5VVC0 180 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 SLC25A47Q6Q0C1 308 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 KLHL24Q6TFL4 600 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 ZNF627Q7L945 461 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 C17orf78Q8N4C9 275 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 NOXO1Q8NFA2 376 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 OR8D4Q8NGM9 314 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 MAGEE2Q8TD90 523 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 RASD2Q96D21 266 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 MUCL1Q96DR8 90 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 DUS3LQ96G46 650 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 SAMD8Q96LT4 415 aa12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 GPX7Q96SL4 187 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-217ENST00000598558 NIPSNAP1Q9BPW8 284 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms