RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 USP22Q9UPT9 525 aa9.98□□□□□ -0.81
LIG3-207ENST00000586119 IFT52Q9Y366 437 aa9.98□□□□□ -0.81
LIG3-207ENST00000586119 TRAV36DV7A0A075B6V5 113 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 A0A087WUJ7 227 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SYNGR3O43761 229 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SERPINI2O75830 405 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 CLPTM1O96005 669 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 ERCC1P07992 297 aaPredicted RBP9.97□□□□□ -0.81
LIG3-207ENST00000586119 GPR6P46095 362 aaPredicted RBP9.97□□□□□ -0.81
LIG3-207ENST00000586119 GIPRP48546 466 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 LMO4P61968 165 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 FXNQ16595 210 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 GSG1Q2KHT4 349 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 MMEL1Q495T6 779 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 ALG10BQ5I7T1 473 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 FAM69AQ5T7M9 428 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 WDR88Q6ZMY6 472 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SNX32Q86XE0 403 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 ZNF584Q8IVC4 421 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 UEVLDQ8IX04 471 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SKA3Q8IX90 412 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SEMA6DQ8NFY4 1073 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SLC38A4Q969I6 547 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 SLC41A3Q96GZ6 507 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 RACGAP1Q9H0H5 632 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 RAD21L1Q9H4I0 556 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 A4GALTQ9NPC4 353 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 ZNF275Q9NSD4 429 aaPredicted RBP9.97□□□□□ -0.81
LIG3-207ENST00000586119 GID8Q9NWU2 228 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 DUSP13Q9UII6 198 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 POFUT2Q9Y2G5 429 aa9.97□□□□□ -0.81
LIG3-207ENST00000586119 LOC102725191A0A1B0GVB3 256 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 B4DSR2 109 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 M0R233 179 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 OR2T1O43869 369 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 BMP2P12643 396 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 COX4I1P13073 169 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 CCL2P13500 99 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 NQO1P15559 274 aaKnown RBP9.96□□□□□ -0.82
LIG3-207ENST00000586119 GLRXP35754 106 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 MAGEB1P43366 347 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 RAB1AP62820 205 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 POU3F1Q03052 451 aaPredicted RBP9.96□□□□□ -0.82
LIG3-207ENST00000586119 HNRNPA0Q13151 305 aaKnown RBP9.96□□□□□ -0.82
LIG3-207ENST00000586119 KRT72Q14CN4 511 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 OR1Q1Q15612 314 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 PAGE3Q5JUK9 113 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 NET1Q7Z628 596 aaPredicted RBP9.96□□□□□ -0.82
LIG3-207ENST00000586119 GLCCI1Q86VQ1 547 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 PAQR4Q8N4S7 273 aaPredicted RBP9.96□□□□□ -0.82
LIG3-207ENST00000586119 LSMEM1Q8N8F7 131 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 IL17RDQ8NFM7 739 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 BBS10Q8TAM1 723 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 TMEM186Q96B77 213 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 SH3GL1Q99961 368 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 OR51B6Q9H340 312 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 IKZF5Q9H5V7 419 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 ARMC7Q9H6L4 198 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 EFCAB1Q9HAE3 211 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 THUMPD1Q9NXG2 353 aaKnown RBP9.96□□□□□ -0.82
LIG3-207ENST00000586119 CORO2BQ9UQ03 480 aa9.96□□□□□ -0.82
LIG3-207ENST00000586119 TRBV5-3A0A0A0MS03 114 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 LOC100653049A0A140TA62 436 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 TMEM247A6NEH6 219 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 C5orf58C9J3I9 102 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 C11orf98E9PRG8 122 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 FBP2O00757 339 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 PLPP3O14495 311 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 MRASO14807 208 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 PPIHO43447 177 aaKnown RBP9.95□□□□□ -0.82
LIG3-207ENST00000586119 CDC14BO60729 498 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 RP2O75695 350 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 KRT34O76011 436 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 FAM157BP0CG42 384 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 GAAP10253 952 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 ARAFP10398 606 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 SAGP10523 405 aaPredicted RBP9.95□□□□□ -0.82
LIG3-207ENST00000586119 EGR1P18146 543 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 AHCYP23526 432 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 AQP1P29972 269 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 PRKAR1BP31321 381 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 RBMXP38159 391 aaKnown RBP9.95□□□□□ -0.82
LIG3-207ENST00000586119 EVX1P49640 407 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 MNAT1P51948 309 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 CDH12P55289 794 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 ERVS71-1P61550 626 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 PMS2P3Q13401 168 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 NFYCQ13952 458 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 TRMT5Q32P41 509 aaKnown RBP9.95□□□□□ -0.82
LIG3-207ENST00000586119 AVPI1Q5T686 147 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 REP15Q6BDI9 236 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 FAHD2BQ6P2I3 314 aaPredicted RBP9.95□□□□□ -0.82
LIG3-207ENST00000586119 DLEU7Q6UYE1 221 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 HACD2Q6Y1H2 254 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 ZNF771Q7L3S4 317 aaPredicted RBP9.95□□□□□ -0.82
LIG3-207ENST00000586119 DHDDSQ86SQ9 333 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 RETREG3Q86VR2 466 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 TREML1Q86YW5 311 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 CCDC36Q8IYA8 594 aa9.95□□□□□ -0.82
LIG3-207ENST00000586119 OR6N1Q8NGY5 312 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms