RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	ACSS1	Q9NUB1	689 aa	Predicted RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CES1P1	Q9UKY3	287 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CDH10	Q9Y6N8	788 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TRDV1	A0A1B0GX56	115 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	DAPL1	A0PJW8	107 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ANKRD61	A6NGH8	418 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CLEC3A	O75596	197 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FAM157B	P0CG42	384 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	F3	P13726	295 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PVR	P15151	417 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CBR1	P16152	277 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CLDN20	P56880	219 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TSPAN31	Q12999	210 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	MAB21L1	Q13394	359 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	NFATC4	Q14934	902 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZNF322	Q6U7Q0	402 aa	Predicted RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	WDR88	Q6ZMY6	472 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	VN1R4	Q7Z5H5	301 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CEACAM19	Q7Z692	300 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SERPINA12	Q8IW75	414 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZNF485	Q8NCK3	441 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	OR11H7	Q8NGC8	314 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	GNPDA2	Q8TDQ7	276 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	DIO2	Q92813	273 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SLC41A3	Q96GZ6	507 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	DPCD	Q9BVM2	203 aa	Predicted RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CHIA	Q9BZP6	476 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	MED28	Q9H204	178 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZCCHC4	Q9H5U6	513 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ADAP2	Q9NPF8	381 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PRMT8	Q9NR22	394 aa	Predicted RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZNF281	Q9Y2X9	895 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063		A0A087WV48	116 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	IMPA2	O14732	288 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	KHNYN	O15037	678 aa	Known RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	RNF13	O43567	381 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ADAP1	O75689	374 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZGLP1	P0C6A0	271 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CTSE	P14091	401 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZNF250	P15622	560 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	GRPR	P30550	384 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	DGCR2	P98153	550 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	NTRK2	Q16620	822 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	DEFB134	Q4QY38	66 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PRRT3	Q5FWE3	981 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	C9orf152	Q5JTZ5	239 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TCEAL6	Q6IPX3	200 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FIGNL1	Q6PIW4	674 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	LYPD4	Q6UWN0	246 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	THSD4	Q6ZMP0	1018 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PRSS42	Q7Z5A4	293 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TGIF2LX	Q8IUE1	241 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	MISP	Q8IVT2	679 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZNF649	Q9BS31	505 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	UBQLN3	Q9H347	655 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SRMS	Q9H3Y6	488 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FGF20	Q9NP95	211 aa	Predicted RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	OBP2B	Q9NPH6	170 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PNO1	Q9NRX1	252 aa	Known RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	STARD5	Q9NSY2	213 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FLVCR2	Q9UPI3	526 aa		10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.6	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	HRK	O00198	91 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PEX12	O00623	359 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CHST10	O43529	356 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PRKN	O60260	465 aa	Predicted RBP	10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	LDB3	O75112	727 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PNP	P00491	289 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	C1QB	P02746	253 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	IFNA6	P05013	189 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CTSB	P07858	339 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FBP1	P09467	338 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	CTXN2	P0C2S0	81 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FBXO45	P0C2W1	286 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	MAK	P20794	623 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	HLA-DMA	P28067	261 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PYCR1	P32322	319 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PER3	P56645	1201 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SOX8	P57073	446 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	VSX2	P58304	361 aa	Predicted RBP	10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	MAPK14	Q16539	360 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PGGHG	Q32M88	737 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TRMT12	Q53H54	448 aa	Known RBP	10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SFRP4	Q6FHJ7	346 aa	Predicted RBP	10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	FAAP20	Q6NZ36	180 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SLC48A1	Q6P1K1	146 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	SSX6	Q7RTT6	188 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	OR5D18	Q8NGL1	313 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ZNF431	Q8TF32	576 aa	Predicted RBP	10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	NR4A3	Q92570	626 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	INTS14	Q96SY0	518 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TIMM29	Q9BSF4	260 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TWSG1	Q9GZX9	223 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PPA2	Q9H2U2	334 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	ASXL3	Q9C0F0	2248 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	BDP1	A6H8Y1	2624 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	WDFY3	Q8IZQ1	3526 aa		10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	PRICKLE3	O43900	615 aa	Predicted RBP	10.59	□□□□□ -0.71
CDK5RAP3-231	ENST00000584063	TBX19	O60806	448 aa		10.59	□□□□□ -0.71

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