RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 HIST1H2ABP04908 130 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 HOXD4P09016 255 aaPredicted RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 IGFBP2P18065 325 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 SLC6A6P31641 620 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 ALDH3B2P48448 385 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 SUMO3P55854 103 aaPredicted RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 CDK5Q00535 292 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 ZNF117Q03924 483 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 KLHL22Q53GT1 634 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 CLEC12AQ5QGZ9 265 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 SMARCD3Q6STE5 483 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 ZNF620Q6ZNG0 422 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 RTL4Q6ZR62 310 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 AHSA2Q719I0 299 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 HIST3H2AQ7L7L0 130 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 PRSS48Q7RTY5 328 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 SPARTQ8N0X7 666 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 IQCF1Q8N6M8 205 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 TCEANCQ8N8B7 351 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 OR5M9Q8NGP3 310 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 OR5M3Q8NGP4 307 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 PFN4Q8NHR9 129 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 TMEM163Q8TC26 289 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 ELP5Q8TE02 316 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 FCGR1BQ92637 280 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 HIST1H2ACQ93077 130 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 C3orf49Q96BT1 292 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 IL4I1Q96RQ9 567 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 FOXC2Q99958 501 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 TMEM43Q9BTV4 400 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 IFT27Q9BW83 186 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 METTL7AQ9H8H3 244 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 LIN28AQ9H9Z2 209 aaKnown RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 ZNF226Q9NYT6 803 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 CNOT2Q9NZN8 540 aaKnown RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 ERVK-18Q9QC07 812 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 KCNN3Q9UGI6 736 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 WARS2Q9UGM6 360 aaKnown RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 PSORS1C1Q9UIG5 152 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 ZNF223Q9UK11 482 aaPredicted RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 KLF13Q9Y2Y9 288 aaPredicted RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 YARS2Q9Y2Z4 477 aaKnown RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 RIIAD1A6NNX1 92 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 NPIPA2E9PIF3 369 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 NPIPA3F8WFD2 350 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 KLRC4-KLRK1H3BQV0 150 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 LYPD3O95274 346 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 IGF2P01344 180 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 IFNGP01579 166 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 IGFBP1P08833 259 aaPredicted RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 MAKP20794 623 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 PAICSP22234 425 aaKnown RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 TACR3P29371 465 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 GRK5P34947 590 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 SSR4P51571 173 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 POLR2HP52434 150 aaKnown RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 FBXW4P57775 412 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 MLF1P58340 268 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 SLC35A2P78381 396 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 TFF3Q07654 80 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 SMN1Q16637 294 aaKnown RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 PGGHGQ32M88 737 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 ANKDD1AQ495B1 522 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 SLC25A30Q5SVS4 291 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 ZNF585AQ6P3V2 769 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 CBLN3Q6UW01 205 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 C5orf46Q6UWT4 87 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 WDR88Q6ZMY6 472 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 KIF18BQ86Y91 864 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 DUSP19Q8WTR2 217 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 APH1BQ8WW43 257 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 ASB15Q8WXK1 588 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 SAMD8Q96LT4 415 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 GPA33Q99795 319 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 ZNF426Q9BUY5 554 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 OR52D1Q9H346 318 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 TP63Q9H3D4 680 aaPredicted RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 DSN1Q9H410 356 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 CHCHD3Q9NX63 227 aaKnown RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 TAS2R10Q9NYW0 307 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 PPP4R1LQ9P1A2 415 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 RSL24D1Q9UHA3 163 aaKnown RBP9.16□□□□□ -0.94
SS18-221ENST00000582448 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.16□□□□□ -0.94
SS18-221ENST00000582448 ICAM5Q9UMF0 924 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 PLEKHA6Q9Y2H5 1048 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 ZNF337Q9Y3M9 751 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 PCDHGB1Q9Y5G3 927 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 MTORP42345 2549 aa9.16□□□□□ -0.94
SS18-221ENST00000582448 ZNF99A8MXY4 864 aaPredicted RBP9.15□□□□□ -0.94
SS18-221ENST00000582448 GMFGO60234 142 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 ENTPD6O75354 484 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 ITGA10O75578 1167 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 NDUFB2O95178 105 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 CDK1P06493 297 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 PIPP12273 146 aaPredicted RBP9.15□□□□□ -0.94
SS18-221ENST00000582448 GABRB1P18505 474 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 FUT1P19526 365 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 PTNP21246 168 aa9.15□□□□□ -0.94
SS18-221ENST00000582448 RPL4P36578 427 aaKnown RBP9.15□□□□□ -0.94
SS18-221ENST00000582448 ZNF41P51814 821 aaPredicted RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms