RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 INIPQ9NRY2 104 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 MAN2C1Q9NTJ4 1040 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 TAGLN3Q9UI15 199 aa20.79■□□□□ 0.92
SHMT1-206ENST00000579558 MCIDASD6RGH6 385 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 FFAR1O14842 300 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 IGHV4-39P01824 125 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 CELA3BP08861 270 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 FUT4P22083 530 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 APOBEC3AP31941 199 aaPredicted RBP20.78■□□□□ 0.92
SHMT1-206ENST00000579558 ARR3P36575 388 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 NPRL3Q12980 569 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 ETFDHQ16134 617 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 GLYATQ6IB77 296 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 ZNF627Q7L945 461 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 RBM15BQ8NDT2 890 aaKnown RBP20.78■□□□□ 0.92
SHMT1-206ENST00000579558 MOSPD2Q8NHP6 518 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 BPIFA2Q96DR5 249 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 SMR3AQ99954 134 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 ARL8BQ9NVJ2 186 aa20.78■□□□□ 0.92
SHMT1-206ENST00000579558 GDF2Q9UK05 429 aaPredicted RBP20.78■□□□□ 0.92
SHMT1-206ENST00000579558 HTR3EA5X5Y0 456 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 SMAD7O15105 426 aaKnown RBP20.77■□□□□ 0.92
SHMT1-206ENST00000579558 NDUFS7O75251 213 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 GMNNO75496 209 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 IGHG1P01857 330 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 HLA-HP01893 362 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 PGA4P0DJD7 388 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 PGA3P0DJD8 388 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 CD79AP11912 226 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 DAP3P51398 398 aaKnown RBP20.77■□□□□ 0.92
SHMT1-206ENST00000579558 CLRN1P58418 232 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 LSM11P83369 360 aaKnown RBP eCLIP20.77■□□□□ 0.92
SHMT1-206ENST00000579558 CLEC12BQ2HXU8 276 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 MYPOPQ86VE0 399 aaPredicted RBP20.77■□□□□ 0.92
SHMT1-206ENST00000579558 CYP4Z1Q86W10 505 aa20.77■□□□□ 0.92
SHMT1-206ENST00000579558 NANOS1Q8WY41 292 aaKnown RBP20.77■□□□□ 0.92
SHMT1-206ENST00000579558 BARX1Q9HBU1 254 aaPredicted RBP20.77■□□□□ 0.92
SHMT1-206ENST00000579558 TSPAN19P0C672 248 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 CALCRP30988 508 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 GSG1Q2KHT4 349 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 HDDC2Q7Z4H3 204 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 NRMQ8IXM6 262 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 PGAM4Q8N0Y7 254 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 FAM156AQ8NDB6 213 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 ASB10Q8WXI3 467 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 B3GNT2Q9NY97 397 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 ENPP4Q9Y6X5 453 aa20.76■□□□□ 0.91
SHMT1-206ENST00000579558 DHHO43323 396 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 PRSS23O95084 383 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 SAGP10523 405 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-206ENST00000579558 TCN1P20061 433 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-206ENST00000579558 ACVR1BP36896 505 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 CHRNB3Q05901 458 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 RUNX1T1Q06455 604 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 PIGFQ07326 219 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 LAPTM4AQ15012 233 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 LRFN4Q6PJG9 635 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 ZNF730Q6ZMV8 503 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 NOXO1Q8NFA2 376 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 OR4F15Q8NGB8 312 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 ACOT11Q8WXI4 607 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-206ENST00000579558 NOX3Q9HBY0 568 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 CA10Q9NS85 328 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 DCAF13Q9NV06 445 aaKnown RBP20.75■□□□□ 0.91
SHMT1-206ENST00000579558 SAMD4AQ9UPU9 718 aaKnown RBP20.75■□□□□ 0.91
SHMT1-206ENST00000579558 HIF3AQ9Y2N7 669 aa20.75■□□□□ 0.91
SHMT1-206ENST00000579558 QDPRP09417 244 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 BMP4P12644 408 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 ACADSP16219 412 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 MAKP20794 623 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 PRKCDQ05655 676 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 TNK1Q13470 666 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 ALG10Q5BKT4 473 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 VHLLQ6RSH7 139 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 CLEC9AQ6UXN8 241 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 PIWIL3Q7Z3Z3 882 aaKnown RBP20.74■□□□□ 0.91
SHMT1-206ENST00000579558 MEX3DQ86XN8 651 aaKnown RBP20.74■□□□□ 0.91
SHMT1-206ENST00000579558 RNF113BQ8IZP6 322 aaKnown RBP20.74■□□□□ 0.91
SHMT1-206ENST00000579558 ANKS4BQ8N8V4 417 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 FBXO17Q96EF6 278 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 ZNF347Q96SE7 839 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 CCT8L2Q96SF2 557 aa20.74■□□□□ 0.91
SHMT1-206ENST00000579558 STX18Q9P2W9 335 aaKnown RBP20.74■□□□□ 0.91
SHMT1-206ENST00000579558 A0A087WUU8 490 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 IGHV2OR16-5A0A0B4J2B6 119 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 FAM171A2A8MVW0 826 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 CENPBD1B2RD01 187 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 ENTPD5O75356 428 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 TRMUO75648 421 aaKnown RBP20.73■□□□□ 0.91
SHMT1-206ENST00000579558 UBL3O95164 117 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 HSD17B1P14061 328 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 MXRA7P84157 204 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 MYBPC1Q00872 1141 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 RAB35Q15286 201 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 SAMD4BQ5PRF9 694 aaKnown RBP20.73■□□□□ 0.91
SHMT1-206ENST00000579558 TSEN54Q7Z6J9 526 aaKnown RBP20.73■□□□□ 0.91
SHMT1-206ENST00000579558 CDK20Q8IZL9 346 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 SLC22A24Q8N4F4 322 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 SYT14Q8NB59 555 aa20.73■□□□□ 0.91
SHMT1-206ENST00000579558 IL17RDQ8NFM7 739 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms