RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 F8A1P23610 371 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CERS1P27544 350 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 OTX1P32242 354 aaPredicted RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 DCTDP32321 178 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CD80P33681 288 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 AHRP35869 848 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CCT3P49368 545 aaKnown RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 SERPINB8P50452 374 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 ARHGDIAP52565 204 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 ATP12AP54707 1039 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 PROK1P58294 105 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 BDH1Q02338 343 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 RGS1Q08116 209 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CRYZQ08257 329 aaKnown RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 VEZF1Q14119 521 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 TGFBIQ15582 683 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 PHKG1Q16816 387 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 ALKBH6Q3KRA9 238 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 IRAK1BP1Q5VVH5 260 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 FRG2Q64ET8 278 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 SBSNQ6UWP8 590 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 FJX1Q86VR8 437 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 THOC6Q86W42 341 aaKnown RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 APLFQ8IW19 511 aaPredicted RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 C7orf57Q8NEG2 295 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 FAM83FQ8NEG4 500 aaPredicted RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 OR2Y1Q8NGV0 311 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 MTERF3Q96E29 417 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 VSTM2LQ96N03 204 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 FOXN4Q96NZ1 517 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 OR2A5Q96R48 311 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 GATA5Q9BWX5 397 aaPredicted RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 TM2D2Q9BX73 214 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 DRC3Q9H069 523 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CDC42EP4Q9H3Q1 356 aaKnown RBP5.41□□□□□ -1.54
VPS53-212ENST00000572259 WDR54Q9H977 334 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 CAB39LQ9H9S4 337 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 PELI2Q9HAT8 420 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 ANKHQ9HCJ1 492 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 STARD5Q9NSY2 213 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 HIF1ANQ9NWT6 349 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 C1RLQ9NZP8 487 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 C11orf21Q9P2W6 132 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 MBD2Q9UBB5 411 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 PSORS1C1Q9UIG5 152 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 TMCO1Q9UM00 188 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 RHBDD3Q9Y3P4 386 aa5.41□□□□□ -1.54
VPS53-212ENST00000572259 IGKV1-8A0A0C4DH67 115 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 IQANK1A0A1B0GTG1 560 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 EXOC1LA0A1B0GW35 172 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SGK494L7N484 410 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 HAT1O14929 419 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ARPC1BO15143 372 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 HCRTR1O43613 425 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 OR1F1O43749 312 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 TIMM8AO60220 97 aaPredicted RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 SUPT3HO75486 399 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 STK16O75716 305 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 PIAS1O75925 651 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ANP32DO95626 131 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 PLAUP00749 431 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SERPIND1P05546 499 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 C2P06681 752 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SNRPAP09012 282 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 RBP1P09455 135 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 CDH1P12830 882 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 CCL2P13500 99 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 IRF2P14316 349 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 B4GALT1P15291 398 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 CD1DP15813 335 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ZNF10P21506 573 aaPredicted RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 MPGP29372 298 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 OR1D4P47884 311 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SOX2P48431 317 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 STXBP1P61764 594 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 RPS18P62269 152 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 CSNK1G2P78368 415 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 HSF1Q00613 529 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 EEF1A2Q05639 463 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 FAM27E3Q08E93 113 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 PLA2G7Q13093 441 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 LY6DQ14210 128 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ESPL1Q14674 2120 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 TSNQ15631 228 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 PRTGQ2VWP7 1150 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 LINC00303Q3SY05 128 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SYT14P1Q58G82 188 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SLC25A53Q5H9E4 307 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 BEX5Q5H9J7 111 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 PAGE2BQ5JRK9 111 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 PDZK1Q5T2W1 519 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 LIPKQ5VXJ0 399 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 FRMPD2BQ6IN97 320 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 TMEM207Q6UWW9 146 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 TMEM107Q6UX40 140 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 MBOAT1Q6ZNC8 495 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ABHD13Q7L211 337 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 HPS6Q86YV9 775 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 CROCCP3Q8IVE0 287 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 MFSD9Q8NBP5 474 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms