RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF813Q6ZN06 617 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 LINGO2Q7L985 606 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 TSEN54Q7Z6J9 526 aaKnown RBP11.38□□□□□ -0.59
CLK3-224ENST00000568605 LINC00471Q8N535 108 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 OR13C2Q8NGS9 318 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 OR52J3Q8NH60 311 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 OR51A7Q8NH64 312 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 NRGNQ92686 78 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 PIGTQ969N2 578 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 FBXW5Q969U6 566 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 CLPTM1LQ96KA5 538 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 ALPK1Q96QP1 1244 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 CCL19Q99731 98 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 TMEM204Q9BSN7 226 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 TXNIPQ9H3M7 391 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 FAIMQ9NVQ4 179 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 GLTPQ9NZD2 209 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 NPAP1Q9NZP6 1156 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 PLEKHA6Q9Y2H5 1048 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 ARID1AO14497 2285 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 CSMD2Q7Z408 3487 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 A0A096LPE4 126 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 TRBV4-1A0A0J9YWV2 114 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 A0A1W2PPR1 153 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 A0A1W2PPZ6 126 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 TCRBV5S2A0A599 114 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 SH3PXD2BA1X283 911 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 A6NIZ1 184 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 AQP12BA6NM10 295 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 HS3ST1O14792 307 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 OR10H3O60404 316 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 FARS2O95363 451 aaKnown RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 RAP2AP10114 183 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 ACADSP16219 412 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 MAGEA2P43356 314 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 CTXN1P60606 82 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 RAP1BP61224 184 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 RPL27P61353 136 aaKnown RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 RAP1AP62834 184 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 ARF1P84077 181 aaKnown RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 CD47Q08722 323 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 BNIP1Q12981 228 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 TOP3AQ13472 1001 aaPredicted RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 ZBED5Q49AG3 693 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 ADAM5Q6NVV9 412 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 TBPL2Q6SJ96 375 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 NHLRC1Q6VVB1 395 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 AQP12AQ8IXF9 295 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 WDR31Q8NA23 367 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 MOSPD2Q8NHP6 518 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 BCL2L2Q92843 193 aaPredicted RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 TMEM54Q969K7 222 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 RSRC1Q96IZ7 334 aaKnown RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 FOXB1Q99853 325 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 ALG12Q9BV10 488 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 CCM2LQ9NUG4 571 aaPredicted RBP11.37□□□□□ -0.59
CLK3-224ENST00000568605 POU2F3Q9UKI9 436 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 FBXL3Q9UKT7 428 aa11.37□□□□□ -0.59
CLK3-224ENST00000568605 CHD3Q12873 2000 aaKnown RBP11.36□□□□□ -0.59
CLK3-224ENST00000568605 XKRYO14609 159 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 TMCC2O75069 709 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 NDUFB2O95178 105 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 ATE1O95260 518 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 B4GALT1P15291 398 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 FUT4P22083 530 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 CD40P25942 277 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 OMPP47874 163 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 LIMS1P48059 325 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 CDH11P55287 796 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 LSM11P83369 360 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLK3-224ENST00000568605 GK3PQ14409 553 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 C3orf36Q3SXR2 165 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 IQCCQ4KMZ1 466 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 PHYHD1Q5SRE7 291 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 SLC22A25Q6T423 547 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 ZNF627Q7L945 461 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 ZNF611Q8N823 705 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 KBTBD8Q8NFY9 601 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 FANK1Q8TC84 345 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 AKAP1Q92667 903 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLK3-224ENST00000568605 SLC7A6OSQ96CW6 309 aaPredicted RBP11.36□□□□□ -0.59
CLK3-224ENST00000568605 MBD6Q96DN6 1003 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 ZNF570Q96NI8 536 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 KATNB1Q9BVA0 655 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 MMADHCQ9H3L0 296 aaPredicted RBP11.36□□□□□ -0.59
CLK3-224ENST00000568605 NELFAQ9H3P2 528 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 YY1AP1Q9H869 796 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 REEP1Q9H902 201 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 SMURF2Q9HAU4 748 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 BEX4Q9NWD9 120 aaPredicted RBP11.36□□□□□ -0.59
CLK3-224ENST00000568605 GRHPRQ9UBQ7 328 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 ITGB1BP2Q9UKP3 347 aa11.36□□□□□ -0.59
CLK3-224ENST00000568605 DHRS12A0PJE2 317 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 DPRXA6NFQ7 191 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 UNC119BA6NIH7 251 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 TNFRSF11BO00300 401 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 CDC42EP2O14613 210 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 DHHO43323 396 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 MGRN1O60291 552 aa11.35□□□□□ -0.59
CLK3-224ENST00000568605 TRMUO75648 421 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms