RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ACTR10Q9NZ32 417 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 COPS3Q9UNS2 423 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 MRPS2Q9Y399 296 aaKnown RBP12.06□□□□□ -0.48
VPS4A-204ENST00000566354 RP1P56715 2156 aa12.06□□□□□ -0.48
VPS4A-204ENST00000566354 H0YGG7 62 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ARPC1BO15143 372 aaKnown RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ARPC3O15145 178 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 KHDRBS3O75525 346 aaKnown RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 IFNGR1P15260 489 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 RPL4P36578 427 aaKnown RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 FASLGP48023 281 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ARF3P61204 181 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 DHODHQ02127 395 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 STX4Q12846 297 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 OPCMLQ14982 345 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ISXQ2M1V0 245 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 FAM209BQ5JX69 171 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 OLFML2AQ68BL7 652 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 SLC35F3Q8IY50 421 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 DDOQ99489 341 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 TAS2R5Q9NYW4 299 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF224Q9NZL3 707 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 PPIEQ9UNP9 301 aaKnown RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ANKRD20A5PA0PJZ0 165 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ACOD1A6NK06 481 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 SELENOFO60613 162 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 SCO1O75880 301 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 CBX7O95931 251 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 GIPP09681 153 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 CALCBP10092 127 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 MYF5P13349 255 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 SPI1P17947 270 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 LSSP48449 732 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 PTH2RP49190 550 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ARRB1P49407 418 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 GPR143P51810 404 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 BPIFB3P59826 476 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 IL10RAQ13651 578 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF528Q3MIS6 628 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 MANEAQ5SRI9 462 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 SLC25A25Q6KCM7 469 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 OGFOD3Q6PK18 319 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 PRSS41Q7RTY9 318 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 C17orf82Q86X59 251 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 MEIOBQ8N635 442 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 OR52R1Q8NGF1 315 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 OR5T3Q8NGG3 340 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 OR2I1PQ8NGU4 316 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 NMNAT3Q96T66 252 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 CAPN10Q9HC96 672 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 GPN1Q9HCN4 374 aaPredicted RBP12.05□□□□□ -0.48
VPS4A-204ENST00000566354 TAS2R10Q9NYW0 307 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 MGAT4CQ9UBM8 478 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 KLK11Q9UBX7 282 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 KIF25Q9UIL4 384 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 FOXJ3Q9UPW0 622 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 ADAM18Q9Y3Q7 739 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 UNC13CQ8NB66 2214 aa12.05□□□□□ -0.48
VPS4A-204ENST00000566354 KMT2EQ8IZD2 1858 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF318Q5VUA4 2279 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PLSCR5A0PG75 271 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PPM1BO75688 479 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 LDOC1O95751 146 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SLC35E2P0CK97 266 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PVRP15151 417 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 HOXA1P49639 335 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 RAP2BP61225 183 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PSG6Q00889 435 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ZNHIT3Q15649 155 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 HLA-BQ31612 363 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 TMEM69Q5SWH9 247 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PEAR1Q5VY43 1037 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PWWP2BQ6NUJ5 590 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 TMEM65Q6PI78 240 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 KIRREL2Q6UWL6 708 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SERPINA12Q8IW75 414 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SYNPRQ8TBG9 265 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PCNPQ8WW12 178 aaKnown RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ZNRF4Q8WWF5 429 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 NSMAFQ92636 917 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 GCDHQ92947 438 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ORAI1Q96D31 301 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 UTP23Q9BRU9 249 aaKnown RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 CHIAQ9BZP6 476 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 NMNAT2Q9BZQ4 307 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SLC25A18Q9H1K4 315 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SLC6A15Q9H2J7 730 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 HCN3Q9P1Z3 774 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 DTX4Q9Y2E6 619 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 OR6C68A6NDL8 312 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SNRPGP15A8MWD9 76 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ACOT7O00154 380 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 CREBL2O60519 120 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 GALR3O60755 368 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ZFPL1O95159 310 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 IL5P05113 134 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 MNDAP41218 407 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 RAD52P43351 418 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms