RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 OR51F2Q8NH61 342 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR4C6Q8NH72 309 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR5AK3PQ8NH89 298 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 GPR151Q8TDV0 419 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SDR42E1Q8WUS8 393 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ST8SIA1Q92185 356 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 CNOT9Q92600 299 aaKnown RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 GHSRQ92847 366 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RIT1Q92963 219 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 PIGTQ969N2 578 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MMABQ96EY8 250 aaPredicted RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 ZFP3Q96NJ6 502 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 AGAP4Q96P64 663 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 GPR78Q96P69 363 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR5B12Q96R08 314 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 OR2M2Q96R28 347 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RBM24Q9BX46 236 aaKnown RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 HDHD5Q9BXW7 423 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 RAB34Q9BZG1 259 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 FAM234AQ9H0X4 552 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 PLK3Q9H4B4 646 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 EFCAB1Q9HAE3 211 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 AGPAT4Q9NRZ5 378 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 SPANXA1Q9NS26 97 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 GPR173Q9NS66 373 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TMLHEQ9NVH6 421 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 MTMR10Q9NXD2 777 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TAS2R14Q9NYV8 317 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 TMEM181Q9P2C4 612 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 METTL1Q9UBP6 276 aaKnown RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 EMCNQ9ULC0 261 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 FOXA2Q9Y261 457 aaPredicted RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 FARSAQ9Y285 508 aaKnown RBP4.57□□□□□ -1.68
VPS35-205ENST00000563984 PEX16Q9Y5Y5 336 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 COLEC10Q9Y6Z7 277 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 GLI2P10070 1586 aa4.57□□□□□ -1.68
VPS35-205ENST00000563984 ZMYM4Q5VZL5 1548 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 KDM6AO15550 1401 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 CD109Q6YHK3 1445 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TRAPPC8Q9Y2L5 1435 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TMEM2Q9UHN6 1383 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 TRBV11-1A0A0K0K1C0 115 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 A0A0U1RRA0 63 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 hCG_38984A0A1B0GV85 526 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OR6C68A6NDL8 312 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TBC1D3BA6NDS4 549 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 K7ERU9 68 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 DNASE2O00115 360 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 CTDSPLO15194 276 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 NKX2-8O15522 239 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 RAD51CO43502 376 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 RGS14O43566 566 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 SYNGR3O43761 229 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 RNASEH1O60930 286 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 SH3BGRLO75368 114 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TM7SF2O76062 418 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 SCELO95171 688 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CER1O95813 267 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TSPAN13O95857 204 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TOMM40O96008 361 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CST1P01037 141 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 IGF2P01344 180 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 THY1P04216 161 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 C8GP07360 202 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 BPGMP07738 259 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OR8U8P0C7N1 319 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 ZNF250P15622 560 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 GZMHP20718 246 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CFHR2P36980 270 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 SUOXP51687 545 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CLDN18P56856 261 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 SELENOTP62341 195 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 MRPS10P82664 201 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 MS4A2Q01362 244 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 HMGCS1Q01581 520 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TNK1Q13470 666 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 RUNX2Q13950 521 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 SF3A2Q15428 464 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 UGCGQ16739 394 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 KCTD19Q17RG1 926 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 MIDNQ504T8 468 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 ASPRV1Q53RT3 343 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 PDZD11Q5EBL8 140 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TPRG1LQ5T0D9 272 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 AVPI1Q5T686 147 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OGFRL1Q5TC84 451 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 TBC1D3GQ6DHY5 549 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OR52W1Q6IF63 320 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CBLN3Q6UW01 205 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 UGT2A3Q6UWM9 527 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 IZUMO2Q6UXV1 221 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 GLDNQ6ZMI3 551 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 AHSA2Q719I0 299 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 ABHD13Q7L211 337 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 MFSD6LQ8IWD5 586 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 AQP12AQ8IXF9 295 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 STPG2Q8N412 459 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 C2orf73Q8N5S3 287 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 C4orf32Q8N8J7 132 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms