RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 IL5P05113 134 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 RBMS2Q15434 407 aaKnown RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 ZNF542PQ5EBM4 170 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 ZNF600Q6ZNG1 722 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 LRRC69Q6ZNQ3 347 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 BAHD1Q8TBE0 780 aaPredicted RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 STK35Q8TDR2 534 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 BADQ92934 168 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 CCDC74AQ96AQ1 378 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 VSTM2LQ96N03 204 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 LRFN5Q96NI6 719 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 FAM60AQ9NP50 221 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 TRAV18A0A075B6X5 111 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 A0A0A6YYC8 382 aaPredicted RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 I3L1I5 382 aaPredicted RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 TACSTD2P09758 323 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 GTF2F2P13984 249 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 GABRA1P14867 456 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 TMEM196Q5HYL7 178 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 SLC36A1Q7Z2H8 476 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 BIVMQ86UB2 503 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 RELL2Q8NC24 303 aaPredicted RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 RPS4Y2Q8TD47 263 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 SP7Q8TDD2 431 aaPredicted RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 PNPLA2Q96AD5 504 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 ELF4Q99607 663 aaPredicted RBP12.01□□□□□ -0.49
CLN3-210ENST00000563874 ZC4H2Q9NQZ6 224 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 PFDN2Q9UHV9 154 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 LAMP5Q9UJQ1 280 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 GTF2A1LQ9UNN4 478 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 EGFP01133 1207 aa12□□□□□ -0.49
CLN3-210ENST00000563874 GRK6P43250 576 aa12□□□□□ -0.49
CLN3-210ENST00000563874 BTG2P78543 158 aa12□□□□□ -0.49
CLN3-210ENST00000563874 MRPS10P82664 201 aaKnown RBP12□□□□□ -0.49
CLN3-210ENST00000563874 SORDQ00796 357 aa12□□□□□ -0.49
CLN3-210ENST00000563874 GSG1LQ6UXU4 331 aa12□□□□□ -0.49
CLN3-210ENST00000563874 OR2AK2Q8NG84 335 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SCARB1Q8WTV0 552 aa12□□□□□ -0.49
CLN3-210ENST00000563874 NSMAFQ92636 917 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ATOH1Q92858 354 aaPredicted RBP12□□□□□ -0.49
CLN3-210ENST00000563874 WDR92Q96MX6 357 aa12□□□□□ -0.49
CLN3-210ENST00000563874 TMEM272A0A1B0GTI8 110 aa12□□□□□ -0.49
CLN3-210ENST00000563874 A6NCN8 305 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SERINC4A6NH21 518 aa12□□□□□ -0.49
CLN3-210ENST00000563874 TUBAL3A6NHL2 446 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ELOA3DA6NLF2 546 aaPredicted RBP12□□□□□ -0.49
CLN3-210ENST00000563874 F5H5P2 479 aa12□□□□□ -0.49
CLN3-210ENST00000563874 H7C417 338 aa12□□□□□ -0.49
CLN3-210ENST00000563874 K7EQS6 105 aa12□□□□□ -0.49
CLN3-210ENST00000563874 OIP5O43482 229 aa12□□□□□ -0.49
CLN3-210ENST00000563874 AKR7A3O95154 331 aa12□□□□□ -0.49
CLN3-210ENST00000563874 CD3DP04234 171 aa12□□□□□ -0.49
CLN3-210ENST00000563874 NAGAP17050 411 aa12□□□□□ -0.49
CLN3-210ENST00000563874 COL9A1P20849 921 aa12□□□□□ -0.49
CLN3-210ENST00000563874 IL10RAQ13651 578 aa12□□□□□ -0.49
CLN3-210ENST00000563874 NFATC4Q14934 902 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ELOA3BQ3SY89 546 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ALG10Q5BKT4 473 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SLC6A19Q695T7 634 aa12□□□□□ -0.49
CLN3-210ENST00000563874 CBLN3Q6UW01 205 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SLC16A9Q7RTY1 509 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SLC43A2Q8N370 569 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ELOA3Q8NG57 546 aa12□□□□□ -0.49
CLN3-210ENST00000563874 BMFQ96LC9 184 aa12□□□□□ -0.49
CLN3-210ENST00000563874 AMELYQ99218 206 aa12□□□□□ -0.49
CLN3-210ENST00000563874 KLHDC3Q9BQ90 382 aa12□□□□□ -0.49
CLN3-210ENST00000563874 LMF2Q9BU23 707 aaKnown RBP12□□□□□ -0.49
CLN3-210ENST00000563874 TMPRSS13Q9BYE2 586 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SHARPINQ9H0F6 387 aa12□□□□□ -0.49
CLN3-210ENST00000563874 SCPEP1Q9HB40 452 aa12□□□□□ -0.49
CLN3-210ENST00000563874 MTFP1Q9UDX5 166 aa12□□□□□ -0.49
CLN3-210ENST00000563874 GPR160Q9UJ42 338 aa12□□□□□ -0.49
CLN3-210ENST00000563874 XRCC3O43542 346 aa12□□□□□ -0.49
CLN3-210ENST00000563874 CTRB1P17538 263 aa12□□□□□ -0.49
CLN3-210ENST00000563874 KIR2DL1P43626 348 aaPredicted RBP12□□□□□ -0.49
CLN3-210ENST00000563874 PRPS1P60891 318 aa12□□□□□ -0.49
CLN3-210ENST00000563874 RPS4XP62701 263 aaKnown RBP12□□□□□ -0.49
CLN3-210ENST00000563874 CTRB2Q6GPI1 263 aa12□□□□□ -0.49
CLN3-210ENST00000563874 POMZP3Q6PJE2 187 aa12□□□□□ -0.49
CLN3-210ENST00000563874 PARGQ86W56 976 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ZNF227Q86WZ6 799 aa12□□□□□ -0.49
CLN3-210ENST00000563874 METTL27Q8N6F8 245 aaPredicted RBP12□□□□□ -0.49
CLN3-210ENST00000563874 OR2G2Q8NGZ5 317 aa12□□□□□ -0.49
CLN3-210ENST00000563874 DUSP19Q8WTR2 217 aa12□□□□□ -0.49
CLN3-210ENST00000563874 PPP1R14AQ96A00 147 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ZNF524Q96C55 264 aa12□□□□□ -0.49
CLN3-210ENST00000563874 UTP23Q9BRU9 249 aaKnown RBP12□□□□□ -0.49
CLN3-210ENST00000563874 Q9N2J8 555 aa12□□□□□ -0.49
CLN3-210ENST00000563874 ERVK-19Q9WJR5 959 aa12□□□□□ -0.49
CLN3-210ENST00000563874 GGT3PA6NGU5 568 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 OR6C65A6NJZ3 312 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 ABHD16AO95870 558 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 CT45A8P0DMV1 189 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 CT45A9P0DMV2 189 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 PPP3CBP16298 524 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 MAOAP21397 527 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 MAPK3P27361 379 aaPredicted RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 FAUP35544 74 aaKnown RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 RAB38P57729 211 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 GK2Q14410 553 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms