RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 CLDN4O14493 209 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 NDUFB2O95178 105 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 KCNE1P15382 129 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 CCNOP22674 350 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 IRS1P35568 1242 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 CTSCP53634 463 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 TLE1Q04724 770 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 IAH1Q2TAA2 248 aaPredicted RBP5.8□□□□□ -1.48
CLK3-212ENST00000563418 AGBL4Q5VU57 503 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 ZNF107Q9UII5 783 aaPredicted RBP5.8□□□□□ -1.48
CLK3-212ENST00000563418 XRCC3O43542 346 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 NSA2O95478 260 aaKnown RBP5.8□□□□□ -1.48
CLK3-212ENST00000563418 KNG1P01042 644 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 P2RX1P51575 399 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 EEF1DP3Q658K8 133 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 AGTRAPQ6RW13 159 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 FBXW12Q6X9E4 464 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 NIPSNAP1Q9BPW8 284 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 ACTR3CQ9C0K3 210 aaPredicted RBP5.8□□□□□ -1.48
CLK3-212ENST00000563418 FBXW2Q9UKT8 454 aa5.8□□□□□ -1.48
CLK3-212ENST00000563418 ZNFX1Q9P2E3 1918 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 ADAMTS4O75173 837 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 CMPK1P30085 196 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 MRPS34P82930 218 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 ZNF154Q13106 437 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SERTAD2Q14140 314 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 PTPRCAPQ14761 206 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 DECR1Q16698 335 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 HFEQ30201 348 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 RGMBQ6NW40 437 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ZDHHC22Q8N966 263 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 OR6K2Q8NGY2 324 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 MYADMQ96S97 322 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 CDCP1Q9H5V8 836 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 B3GAT2Q9NPZ5 323 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 USP21Q9UK80 565 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ADAP1O75689 374 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 GDF5P43026 501 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SOX4Q06945 474 aaPredicted RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 MOB3CQ70IA8 216 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 UEVLDQ8IX04 471 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SYS1Q8N2H4 156 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 HOXB13Q92826 284 aaPredicted RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 TP53RKQ96S44 253 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 RIMBP3CA6NJZ7 1639 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 RIMBP3BA6NNM3 1639 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 RIMBP3Q9UFD9 1639 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 TRBV23-1A0A0A0MS06 115 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 IFITM5A6NNB3 132 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 PRRG1O14668 218 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ACP5P13686 325 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ARL4DP49703 201 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 BACE1P56817 501 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 STARD6P59095 220 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 PPP1CBP62140 327 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 AMZ1Q400G9 498 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SFRP5Q5T4F7 317 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 FKBP1CQ5VVH2 108 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SBSNQ6UWP8 590 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 TMIGD1Q6UXZ0 262 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 UMODL1-AS1Q8N2C9 162 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 A4GALTQ9NPC4 353 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 RALYQ9UKM9 306 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 MRPS23Q9Y3D9 190 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 YTHDF2Q9Y5A9 579 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 IL33O95760 270 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 PAFAH1B2P68402 229 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SSX1Q16384 188 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 LYRM7Q5U5X0 104 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SNX22Q96L94 193 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SAMD8Q96LT4 415 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 FIZ1Q96SL8 496 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SLC17A9Q9BYT1 436 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 NMES1Q9C002 83 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ADAM29Q9UKF5 820 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SLC7A11Q9UPY5 501 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 TGIF2-C20orf24A0A0A6YYL0 155 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 B3GALT2O43825 422 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 RNGTTO60942 597 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 CXCL3P19876 107 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SELENOPP49908 381 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 NUTF2P61970 127 aaKnown RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 LINC00303Q3SY05 128 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 TP53I3Q53FA7 332 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 PRAMEF14Q5SWL7 426 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 CLECL1Q8IZS7 167 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 OR2L13Q8N349 312 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 KHSRPQ92945 711 aaKnown RBP eCLIP5.79□□□□□ -1.48
CLK3-212ENST00000563418 SMIM19Q96E16 107 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 PPP1R3CQ9UQK1 317 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SNED1Q8TER0 1413 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 SLC22A20A6NK97 555 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ZNF727A8MUV8 499 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 USP2O75604 605 aaPredicted RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 USF1P22415 310 aaPredicted RBP5.79□□□□□ -1.48
CLK3-212ENST00000563418 CSNK1A1P48729 337 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 BIDP55957 195 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 TNFRSF9Q07011 255 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 GBX1Q14549 363 aa5.79□□□□□ -1.48
CLK3-212ENST00000563418 ACER2Q5QJU3 275 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms