RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RBP7Q96R05 134 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 GPA33Q99795 319 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 PKP2Q99959 881 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 NIPSNAP1Q9BPW8 284 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 RBM4BQ9BQ04 359 aaKnown RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 C9orf16Q9BUW7 83 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 EMC6Q9BV81 110 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 RBM4Q9BWF3 364 aaKnown RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 PRRG3Q9BZD7 231 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ENKD1Q9H0I2 346 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 SMURF2Q9HAU4 748 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 NTN4Q9HB63 628 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 NRIP3Q9NQ35 241 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 PAPOLBQ9NRJ5 636 aaKnown RBP8.9□□□□□ -0.98
USP3-216ENST00000559873 SLC7A10Q9NS82 523 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 KRT84Q9NSB2 600 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 IL20Q9NYY1 176 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 OAZ3Q9UMX2 235 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 ORC6Q9Y5N6 252 aa8.9□□□□□ -0.98
USP3-216ENST00000559873 TUBAL3A6NHL2 446 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 M0R3G1 203 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 ARPC3O15145 178 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 AHCYL1O43865 530 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 UPK3AO75631 287 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 SOX14O95416 240 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 PPP1R3DO95685 299 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 BAG2O95816 211 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 IFNGP01579 166 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 PGA4P0DJD7 388 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 PGA3P0DJD8 388 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 OSMP13725 252 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 PAX7P23759 505 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 IGFBP5P24593 272 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 UGT2B10P36537 528 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 GUCA1AP43080 201 aaPredicted RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 ZNF84P51523 738 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 ROR2Q01974 943 aaKnown RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 FHL1Q13642 323 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 RCN1Q15293 331 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 SLC36A3Q495N2 470 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 CLEC12AQ5QGZ9 265 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 SFRP5Q5T4F7 317 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 DNM1P34Q6PK57 102 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 KLHL17Q6TDP4 642 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 BHLHA15Q7RTS1 189 aaPredicted RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 CXorf67Q86X51 503 aaPredicted RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 C20orf196Q8IYI0 205 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 HS3ST5Q8IZT8 346 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 EME1Q96AY2 570 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 SAMD8Q96LT4 415 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 ERMAPQ96PL5 475 aaPredicted RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 MED18Q9BUE0 208 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 TSSK6Q9BXA6 273 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 EGLN3Q9H6Z9 239 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 MOV10Q9HCE1 1003 aaKnown RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 C8orf4Q9NR00 106 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 GLTPQ9NZD2 209 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 NDRG3Q9UGV2 375 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 IL20RAQ9UHF4 553 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 ZNF346Q9UL40 294 aaKnown RBP8.89□□□□□ -0.99
USP3-216ENST00000559873 ADAM18Q9Y3Q7 739 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 TENM4Q6N022 2769 aa8.89□□□□□ -0.99
USP3-216ENST00000559873 ICE1Q9Y2F5 2266 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 TEX13CA0A0J9YWL9 993 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 SAC3D1A6NKF1 404 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 RIIAD1A6NNX1 92 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 RPL36A-HNRNPH2H7BZ11 118 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 PDLIM1O00151 329 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 ARHGEF9O43307 516 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 TRMUO75648 421 aaKnown RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 RAD51DO75771 328 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 LYZL6O75951 148 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 FARS2O95363 451 aaKnown RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 TXNDC12O95881 172 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 RENP00797 406 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 COX6B1P14854 86 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 ZNF3P17036 446 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 IGHV1-2P23083 117 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 EDNRAP25101 427 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 POU1F1P28069 291 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 NTF4P34130 210 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 ESRRGP62508 458 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 FAM27E3Q08E93 113 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 CEACAM16Q2WEN9 425 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 MESTQ5EB52 335 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 THEM4Q5T1C6 240 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 SLC27A4Q6P1M0 643 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 NHLRC1Q6VVB1 395 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 THSD4Q6ZMP0 1018 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 STAC2Q6ZMT1 411 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 MEX3BQ6ZN04 569 aaKnown RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 FAM122BQ7Z309 247 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 P2RY8Q86VZ1 359 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 ZNF433Q8N7K0 673 aaPredicted RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 ZNF519Q8TB69 540 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 NANOS1Q8WY41 292 aaKnown RBP8.88□□□□□ -0.99
USP3-216ENST00000559873 TMEM54Q969K7 222 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 Q96M85 177 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 PSMG3-AS1Q96PY0 264 aa8.88□□□□□ -0.99
USP3-216ENST00000559873 SNX18Q96RF0 628 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms